Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgattcctttgccacctttttaataattaaagcaactgcttgtggctcaagccagccagatggtttttgtatgattgtctatatgaaaaggatgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA05G07990.1 (Glycine max), 5'ss of exon 13
GTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgattcctttgccacctttttaataattaaagcaactgcttgtggctcaagccagccagatggtttttgtatgattgtctatatgaaaaggatgc------
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GTCTTGTATATATCATTGCATAGACATGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCCGAAGAGgtacatgactgca--gacaaattttcaa--attaaa-ctgctgctgctggca-aacttagccaggtgctttttggtctggtatttgtggaaatactatttttattt
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G13000.1 (Glycine max), 5'ss of exon 10
GTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgattcctttgccacctttttaataattaaagcaactgcttgtggctcaagccagccagatggtttttgtatgattgtctatatgaaaaggatgc------
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GTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAATTTTATCCTGGTACTGGAGCTGCTGAAGAGgtacatgactgca--gacaaattttcaa--attaaa-ctgctgctgctggc-caacttagccaggtgctttttggtctggtatttgtggaaatactattattatta
upper sequence: Vv17s0000g04120.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G18520.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgattcctttgccacctttttaataattaaagcaactgcttgtggctcaagccagccagatggtttttgtatgattgtctatatgaaaaggatgc-------
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GTATTGTACATATCCTTGCACAGACATGAGGGAGGAAACTTCTATCCCGGTACTGGAGCTGCTGATGAGgtaccta--tgcttttctg--ttttacattgtctcatccagcattcatgagtagatttagtt-gttggtatatatatg--catataccttatttgtgtgtttggtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691711|gb|EC982596.1|EC982596EST: GGAAACTTCTATCCTGGTACTGGGGCATCACACGAG GTGGGCAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGT
genomic: GGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgatt ... atttctgtagGTGGGCAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGgtacttgattcctttgccacctttttaataattaaagcaactgcttgtggctcaagccagccagatggtttttgtatgattgtctatatgaaaaggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa