1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTATAAAGAATGGGGAGATGCTTGGAGTTTCACACTTGAGGAACAGAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatttgtgaaggtttcctttctgtttattttaagaagtgcagtagaaaattccaataaaccaattttttaaattgcag
species | Vitis vinifera |
transcript | Vv17s0000g01640.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCEST: gi|351015920|gb|FQ431875.1|FQ431875
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCEST: gi|351044679|gb|FQ443210.1|FQ443210
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCEST: gi|351044040|gb|FQ431471.1|FQ431471
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACATCAACTGAACTTTGCEST: gi|352790717|gb|FQ478265.1|FQ478265
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCEST: gi|351030219|gb|FQ432157.1|FQ432157
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCEST: gi|351013519|gb|FQ425550.1|FQ425550
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
EST: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAG TTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
genomic: GAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatt ... taaattgcagTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATAAAGAATGGGGAGATGCTTGGAGTTTCACACTTGAGGAACAGAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGgttggtgatttgtgaaggtttcctttctgtttattttaagaagtgcagtagaaaattccaataaaccaattttttaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA