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AGTCAGAGAACAGTTGTGCTCGAGGCATTCTCGTTACCATTTGATGCACTACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagttacttctcatcttagccatcagtatatccttgaaaatttgttgcaaatgtaatgctaatatgatagctttaatatcgaagaattgtcatttc...
species | Vitis vinifera |
transcript | Vv17s0000g01390.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|110693305|gb|EE069430.1|EE069430
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|110715877|gb|EE094430.1|EE094430
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|110386523|gb|EC951123.1|EC951123
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|351027836|gb|FQ448406.1|FQ448406
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|37187323|gb|CF606676.1|CF606676
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACEST: gi|110693717|gb|EE070192.1|EE070192
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACAC
EST: ATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|26261768|gb|CA812831.1|CA812831
genomic: ATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGEST: gi|110701577|gb|EE079309.1|EE079309
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
EST: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAG GGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
genomic: ACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagtta ... acttgaacagGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCAGAGAACAGTTGTGCTCGAGGCATTCTCGTTACCATTTGATGCACTACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGgtaccagttacttctcatcttagccatcagtatatccttgaaaatttgttgcaaatgtaatgctaatatgatagctttaatatcgaagaattgtcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaat