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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGGgtaaatactaagaaagtctacatttgtatgttgccattgattcatatatttgttgtgatgattgaacccaattctatgtcag

Basic information

species Vitis vinifera
transcript Vv17s0000g00310.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGGgtaaatactaagaaagtctacatttgtat-gttgccattgattcatatatttgttgtgatgattgaacccaattctatgtcag
||||||| |||| | ||||| ||||||||| |||||||||||||||| || || || |||||  |||| ||  |  | |  |||  ||| | || |  ||  | ||   |||| || |     |||     ||||     ||   ||  |||    |  |||| | ||||
GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagtaatg-gatggcctctgtttggattgcatgtattctggaatattcagtttacaatacttgg---ctgttctgtttcag

upper sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
GCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAA-AGGgtaaatactaa-----gaaagtctacatttgtatgttgccattgattcatatatttgttgtgatgattgaacccaattctatgtcag-------
||||| ||||| |||||||| ||||| ||| | |||||||||||||| ||||| || || || |||||| |  |  |||| | | |   || ||  | |     |||  | |  |  ||       |   ||        || | ||   |   |  |   ||| | ||| |          
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattac-acactaaagaacaactttattttttatgcatt

upper sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G61980.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGGgtaaatactaagaaagtctacatttgtatgttgcc-attgattcatat---atttgttgtgatgattgaac--ccaattctatgtcag------------
||||||||||||| |||||| ||||||||| | ||||| |||||||||||||| |||||||||||||||| | |  ||| |||||| | ||  |     | | | || |      |  |||  |||  ||| | |   |    |  |     ||||       || || |  |              
GCAGAGAATGCACAGGATCAGATGGACTGGATCGAAAAAATAACTGGAGTAATTGCTTCTTTGTTGAGTTTCCAAACACCTGAAAGAGCAATCATGgttagattttataagatattactgctgattatttcttgtctgacccatcttcgctgttgagtaatgtatcctttaccttcaactcgaccag