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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATGGAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGgtactaataacacttttaagcccatcacttttttacacacattttctatggtccatggtccatttttaatggggctgtccatcag

Basic information

species Vitis vinifera
transcript Vv16s0050g01110.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 2
CTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATG---GAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGgta----ctaataacacttttaagc--ccatcacttttttacacacattttctatggtccatgg---tccatttttaatggggctgtccatcag---------
|||  ||   |  | |||||||||||   |||||| ||||     | |||||||  |   ||||||||||||||||| || ||||||||||| |||||||| ||||    |||    ||    |||||  | || |    ||   | |  |  |  |||   ||| |     ||||||||||    || |   | |          
CTTCCTG---TGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGgtaactactagcctcatcactaagcagctattagaggtt-gtaaaggtcatgcatgtctcattggaaatcatttttaatatcacttttatttattcattatag

upper sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA16G29780.1 (Glycine max), 5'ss of exon 3
CTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATG---GAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGgtactaataacacttttaagcccatcacttttttacacacatttt--ctatggtccatgg---tccatttttaatggggctgtccatcag-----------
|||  ||   |  | |||||||||||   |||||| ||||     | |||||||  |   ||||||||||||||||| || |||||||||||  ||||||| ||||   |  | ||   | | |  | ||  | ||        ||      |||   ||| |      ||||||||||   || |  ||              
CTTCCTG---TGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactactagacccatca-ctaaacatctattagaggttgttaaggtcatgtctcattggaaataatttttaatgtctctttttatttttatttcattag