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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGGAGAGAAAAGATCTACATACATTCTCGAACTTCGTCAAGAATCCCCTGAACCTTTCAAGAGTgtaagctctttttatgagaaaataagaatattttgtggaaaacaatgttttttcagttgcctttttgtttacattagtctttttcctatatttctttgatttatattttaaccaatattttggtttgacag

Basic information

species Vitis vinifera
transcript Vv16s0050g00670.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA09G25160.1 (Glycine max), 5'ss of exon 13
GGTATTGGAGAGAAAAGATCTACATACATTCTCGAACTTCGTCAAGAATCCCCTGAACCTTTCAAGAGTgtaagctctttttatgagaaaataagaatattttgtggaaaacaatgttttttcagttgcctttttgtttacattagtctttttcctatatttctttga---tttat-attttaaccaatattttggtttgacag
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GGAATTGGAGAGAAGAGAGCTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGTgtatgtccccattcttagtaaattttcacactat-----aatttttcctttatcaattattttttaccg---gttaaatgtgtttatacatttgctgaaaattttgtgattgtgaaccaacttttaatt-aacag