Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATAAAGCAGTTGGTGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgtacttttacaagctacttaaaatggtgacaaatcactttcacagttgcttctcttgttatctttatctcaaaataactttcttgatag

Basic information

species Vitis vinifera
transcript Vv15s0048g00490.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00490.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA01G33520.1 (Glycine max), 5'ss of exon 14
GAAATAAAGCAGTTGGTGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgtac----ttttacaagctacttaaaatggt-gacaaatcactttcacagttgcttctcttgttatctttatctcaaaataactttcttgatag
||||||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||| ||  | ||||      |||  ||  ||  | ||||  | ||   ||   |||  ||| | ||  | || |||| | |   |                    
GAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGgtatacttctttgtaaaatatcttaaatatttgatggatacatttggcagct-ctaatattattatttattaatag------------------

upper sequence: Vv15s0048g00490.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA03G03350.1 (Glycine max), 5'ss of exon 12
GAAATAAAGCAGTTGGTGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgta----cttttacaagctacttaaaatggtgacaaatcactttcacagttgcttctcttgttatctttatctcaaaataactttcttgatag
||||||||||||||||||| |||||||| || || ||||| ||||||||||||||||| ||  | ||||      |||| ||  |   | |||| |  |    | |     |||  ||       |  |||  || | |   ||||             
GAAATAAAGCAGTTGGTGTGATGAAGGCCGGACAGACCTTTACAATTGAACCTATGATCAATGCCGgtatacttctttataatatctcttaaatagataactttgatagatacatgtggcagctctaatattattgtttattaatag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32268561|gb|CD717720.1|CD717720
EST:     TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAG                         GGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGTTACTGCAG
genomic: TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgtacttttac ... ttcttgatagGGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGTTACTGCAG
EST: gi|32270889|gb|CD720048.1|CD720048
EST:     TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAG                         GGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGTTACTGCAG
genomic: TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgtacttttac ... ttcttgatagGGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGTTACTGCAG
EST: gi|110689166|gb|EE065152.1|EE065152
EST:     TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAG                         GGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGGTACTGCAG
genomic: TGTCATGAAGGCTGGGCAAACCTTCACAATTGAACCTATGATTAACACAGgtacttttac ... ttcttgatagGGGTTTGGCGTGATCGGATGTGGCCCGATGGATGGACTGCTGTTACTGCAG