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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccataatcgtaaatgattatccatgagatgtttagtgatcaaagctaatcataaaaggaagtcttcctttttgttttatgcatgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g02610.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA03G27270.1 (Glycine max), 5'ss of exon 47
TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgt------gtcccataatcgtaaatgattatccatgagatgtttagtgatca--aagctaatcataaaaggaagtcttcctttttgttttatgcatgcag
|||||| || |||||||| |||||||||||| | || || || || ||||||||||| || | ||||||||| ||||| ||||||||||| ||||| |||||       || |||| |      | |   |   |   |  || ||  | ||  ||| | | | ||   |       | | || || ||  || |  |||
TGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGCAGTATGAGGCTGCCAGACCCATCTACTCCTAATTTGAAGgtcttagaatctcatacttacctttaaacgtttgtttaagattaaggaagcattaagttga-cgtagttgatgtgactgccttgtgcttc-tgtacacag

upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G14770.1 (Glycine max), 5'ss of exon 47
TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccataatcgtaaatgattatc--catgagatgtttagtgatca--aagctaatcataaaaggaagtcttcctttttgttttatgcatgcag
|||||| || |||||||| |||||||||||| | || || || || ||||||||||| || | ||||||||| ||||||||||||||||| ||| | |||||  |  ||||||  | |   |||||    ||  ||| |||  || ||  ||| |   | ||   |  |    | | || || ||  |  ||||||
TGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCACGTAGTATGAGGCTGCCAGATCCATCTACTCCTAATCTGAAGgt--cttataatctcatacttttatcgttttgttatggttaaggagcattaagttgg-cgtagttgatatgactgccttgtgcttctt-tatgcag

upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA03G27260.1 (Glycine max), 5'ss of exon 30
TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccataatcgtaaatgattatccatgagatgtttagtgatcaaagctaatcata-------aaaggaagtcttcctttttgttttatgcatgcag
|||||| || ||| |||| |||||||||||| | || || || || ||||||| ||| || | ||||||||| ||||| ||||||||||| || || ||||| |   |   || ||  |   | |  | |   ||||||  ||| || |   || |         |   || ||       ||  | || || |  |||
TGATGTTATTCCTTCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATGTCCGCGTAGTATGAGGCTGCCAGACCCATCTACTCCTAAATTGAAGgtcttagaatctcttacctacctttaaacgtt-tgtttaa-gattaaggagcattaagttgacgtagttgatgtgacagccttattcttctgtacacag

upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccataatcgtaaatgattatccatgagatgtttagtgatcaaagctaat-cataaaaggaagtcttcctttttgt-tttatgcatgcag
||||||||| ||| |||| |||||||| ||||| || |||||||| ||| | ||||| || || ||||||||||| ||||| ||||| || |||||||||||     || || ||  |   |    ||||       || |  | ||||  |||  ||     | || ||   || | || || ||   |||||
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatatt--ttaaagaaaatatattccttgtaggctgaattatcgtgttcat---tgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302483|gb|CB979277.1|CB979277
EST:     CATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCTAATTTAAAG                         ATAGATTTGCTGGTGGAGATCAATCAGTCCCCACTTATTCTCTCAGATGTT
genomic: CATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccata ... atgcatgcagATAGATTTGCTGGTGGAGATCAATCAGTCCCCACTTATTCTCTCAGATGTT