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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgtttaatctttgagtgcatgatacacatgttcttcatctgatcatcttcagttttgagaattttattgaagttagtggcatgtgtctgctgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g02230.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G110626_T01 (Zea mays), 5'ss of exon 14
TGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgtttaatctttgagtgcatgatacacatgttcttcatctgatcatcttca-gttttgagaattttattgaagttagtggcatgtgtctgctgcag
||| ||||| || ||  | ||| |||||||||| || || || || || || || ||||||||||| |||||||||||||||||  |||| ||||| |||||| || |   |  |    | | |   | |  |    ||   |  |||| | |    |    |  |  ||  || |   |  |                 
TGCGTTATCAGTTTACCTTGAGAACCTTGCAACGACCTTGGGTTCTCGGGAACAATTGGCAATTGCTGAATTTGCTGAATCTTTGTTAATCATACCAAAGgttttgatctgttctattctactt---atatttcccttttcaccaatcaacatagcatagcaatgaccttgctgcaacaacag-----------------

upper sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G039263_T01 (Zea mays), 5'ss of exon 14
TGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgtttaatctttgagtgcatgatacacatgttcttcatctgatcatcttcagttttgagaattttattgaagttagtggcatgtgtctgctgcag
|||  | || || ||| ||||| |||||||||||||  | || || || || || ||||||||||| ||||||||||| |||||  |||| ||||| |||||| || |   |  |    | | ||         || ||   |  |||| | |        || |||||| |||  | |    | || | || | |   
TGCGCTGTCAGTTTATCTGGAGAACCTTGCAACAACCCTGGGTTCTCGGGAACAATTGGCAATTGCTGAATTTGCTGAGTCTTTGTTAATCATACCAAAGgttttgatctgttctattttacttgtagttttacttttttcgcaaatcaacat--------agcattttaatgacctgac---cttgcgcctacag---

upper sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA05G29870.1 (Glycine max), 5'ss of exon 14
TGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgtttaatctttgagtgcatga-tacacatgttcttcatctgatcatcttcagttttgagaattttattgaagttagtggcatgtgtctgctgcag--
 || ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| ||| || |||| || || |||||    |  || ||   | |  |||  |  |  | |   || |||| | || ||     |    |   |  |||    |||| | |    |    |  ||  
AGCATTATCAGTTTATTTGGAGTACCTTGCTACAACTTTAGGATCTCGAGAGCAGTTGGCTATAGCAGAATTTGCTGAGTCTCTATTAATCATTCCTAAGgtaagttacaagct--aaattaatggcttaaggtttggatcttctgcttattttacaactaactagggtggttgggcctagttgaacacatggtataaagtt

upper sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G12970.1 (Glycine max), 5'ss of exon 14
TGCTTTATCTGTGTATTTGGAGTACCTTGCAACAACTTTAGGATCCCGAGAGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgtttaatctttgagtgcatgatacaca-tgttcttcatctgatcatcttcagttttgagaattttattgaa-gttagtggcatgtgtctgctgcag-
 || ||||| || ||||| ||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||| ||| |  |||| || || |||||    |  || ||   | |  |||    |   | |   || |||| | || ||     |    |   |  |||   | |||| | |    |   ||  || 
AGCATTATCAGTTTATTTAGAGTACCTTGCTACAACTTTAGGATCTCGGGAGCAGTTGGCTATAGCAGAATTTGCTGAGTCTCTGTTAATTATTCCAAAGgtaagttacaagct--aaattaatggcctaaggtttgggtcctctgcttattttacaactaattagggtggttgggtgctagttgaacaaatgatctaaagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699451|gb|EE076471.1|EE076471
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|110702474|gb|EE081230.1|EE081230
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|26264285|gb|CA815348.1|CA815348
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GCGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|351037610|gb|FQ462593.1|FQ462593
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCAAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|110701345|gb|EE078813.1|EE078813
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|351017726|gb|FQ436079.1|FQ436079
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGGATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|34545337|gb|CF513569.1|CF513569
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|34545258|gb|CF513490.1|CF513490
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|32272417|gb|CD721576.1|CD721576
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|110688105|gb|EE066273.1|EE066273
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCAAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|351048864|gb|FQ431529.1|FQ431529
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|351026359|gb|FQ428371.1|FQ428371
EST:     CAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: CAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|30138039|gb|CB923377.1|CB923377
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|110371042|gb|EC934755.1|EC934755
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|161712591|gb|FC062193.1|FC062193
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|26266195|gb|CA817258.1|CA817258
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
EST: gi|110362101|gb|EC925611.1|EC925611
EST:     AGCAGTTGGCAATCGCAGAATTTGCTGAATCTTTACTAATAATACCGAAG                         GTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA
genomic: AGCAGTTGGCAATTGCAGAATTTGCTGAATCTTTACTAATAATACCGAAGgttctgttta ... tctgctgcagGTGCTTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTA