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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat...

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 13
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat
|| |||||||| ||||||||||| || ||||||||  | |||||||| || || |||||||| ||||| || ||||||||||||||||| || ||||| |||     | ||||| |||       || ||  | || ||   ||   ||||  |||  ||     ||||  |   | | |  ||  ||           
TTCACTCCTCATCCACATGCTGGTGATAAGTGGTGCATCTATCCAAGCTATGACTATGCTCACTGCATGGTGGATTCTCTTGAGAACATTACACATTCGgta-----ctttgccttttc-----tcaattagattgagttagttgcattatggcatgatgtgg--actaagt---gtggttattcattag---------

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 13
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat--------------
||||| ||||| || |||||||| |||||||||| | | |||||||| || || |||||||||||  | || || |||||||| ||||| || ||||| |||        |  |  | || |  |  ||  |  |||| |  ||  | | |||    ||| ||| |  | ||  | |         |||| || | | |              
TTTACACCTCATCCCCATGCTGGCGACAAGTGGTTTATCTATCCAAGCTATGACTATGCTCATTGTTTGGTTGACTCTCTTGAAAACATTACCCATTCGgtaa----tagtttctctctaactacttttggttgtgtgagccttaacatgttatcagttgaaattatcagttgtacacactagaatttgacatatggctgttgcaatcaccag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 13
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat
|| || || || ||||||||||| |||||||||||||| ||||| || || || || ||||||||||| || ||||||||||| |||||||| ||||| |||   || | |    || | | |   ||  ||  |   ||  |||    || ||| |    | ||| | | ||| |  ||  || || |          
TTCACCCCCCATCCACATGCTGGCGACAAGTGGTGTGTCTATCCGAGCTATGACTACGCTCATTGCATGGTGGATTCTCTTGAAAACATCACACATTCGgtaatttcacctttttttcttttccaaatagtttttagttg-gtttaacaataacaata---actaagtctgttatgtcttatttgctag----------

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 12
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat
|| || ||||| ||||||||||| || || |||||| | ||||| || || || |||||||||||||| || ||||||||||| |||||||| ||||| |||   |  |||    |||  |   | | |  |  || ||   |||    || |||   | ||  ||||  ||      ||  ||  |||  |       
TTCACCCCTCATCCACATGCTGGTGATAATTGGTGTATCTATCCGAGCTATGACTATGCTCATTGCATGGTGGATTCTCTTGAAAACATCACGCATTCGgta-attttcttattttttcttttccaaatagttttgagttggtttaacaataacaggatacaggaactgattctgttatttcttatttgttag------

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttt-tatcctccat-ttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgttt-cttgaaattttgat-
||||| || ||||| |||||||||||||| |||||| | ||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||| | |  ||| | ||   | |||||||  | || ||      ||||||||  |         | |  || |||||  |     |||  |||||  ||  |  
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgataca---attttcttgctggtaaccttagtt-cttttttattacccattttatttgaaccttcaaca

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttt-tatcctccat-ttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat
||||| || ||||| |||||||||||||| |||||| | ||||||||||| |||||||| || |||||||| |||||||| ||||| ||||| ||||||||| | |  ||| | ||   | |||||||  | || ||     | | ||  |  ||   |  |   |   | | |||    || | |  |||||  ||  | 
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttt-tattacccatttgctgtttgaaccttcaa-

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccctt---gcccttttatcc---tccatttttaatgtgtgta--ttttcttattacattttgc-aataactatttt-------aagagttcgtttcttgaaattttgat---------------------------------------------------------------
||  | ||||| ||  | ||||| |||||||||||| | ||||| ||||| |||||||| || |||| ||| |||||||||||||| || || ||||| ||  |   | ||   |  |||||  |    | ||   ||| |   | ||  |||   |  | |||||||| | ||  || |||       || | |||  || |    ||    |                                                                
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S43_166V6.1 (Physcomitrella patens), 5'ss of exon 15
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcc-cttgcccttttatcctccatttttaatgtgtgtattttcttattacattt---tgcaataactattttaagagttcgtttcttgaaattttgat---
||||||||||||||||||| |||||| || |||||| | ||||| || ||||||||  | ||||||||||| ||| || | |||||| | || ||||||||  | ||  |||||| ||   || |  |||||| || | | ||||||||  | ||  ||   ||  |  | ||  ||   |    | |||   |   || ||    
TTTACTCCTCACCCACATGTTGGAGATAAATGGTGTATATATCCTAGCTACGATTACACGCATTGCATTGTTGATGCTTTGGAGAACGTTACCCATTCAgtgagttcaacttgccatt---tcttttattttttat-tttttattttctcttaactgttgaatgttaagaataccttgcaa-ccagcttcc--actcttcgacgca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035456|gb|FQ463301.1|FQ463301
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTTCT-ACTACTGGTTATT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT-CTTACTACTGGTTATT
EST: gi|351016500|gb|FQ423927.1|FQ423927
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351016499|gb|FQ423926.1|FQ423926
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351025032|gb|FQ433449.1|FQ433449
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTG
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTG
EST: gi|351033348|gb|FQ446580.1|FQ446580
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: gi|351027650|gb|FQ446817.1|FQ446817
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTAAT-A
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351024489|gb|FQ426298.1|FQ426298
EST:     ACGATTATGCTCATTGCATTGTAAATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351046338|gb|FQ448643.1|FQ448643
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTG
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTG
EST: gi|351054204|gb|FQ450286.1|FQ450286
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATT
EST: gi|351019825|gb|FQ439642.1|FQ439642
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351033263|gb|FQ462035.1|FQ462035
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351054398|gb|FQ450481.1|FQ450481
EST:     ACGATNATGCTCATTGCATTGTAGATTCTCTTGAGACCATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: gi|349832664|gb|FQ422022.1|FQ422022
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: gi|351056659|gb|FQ443286.1|FQ443286
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTT
EST: gi|351028040|gb|FQ425941.1|FQ425941
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCAATCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACT
EST: gi|351042076|gb|FQ456286.1|FQ456286
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351046877|gb|FQ454487.1|FQ454487
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACCGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351035498|gb|FQ463343.1|FQ463343
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGATTTTGAGACACGGCGTGC
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGC
EST: gi|351031204|gb|FQ445031.1|FQ445031
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTAAGACACGGCGTGCTTCTTACT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACT
EST: gi|351036533|gb|FQ457246.1|FQ457246
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTTCT-ACTACTGGTTATT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT-CTTACTACTGGTTATT
EST: gi|349827622|gb|FQ422490.1|FQ422490
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351025469|gb|FQ435161.1|FQ435161
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTTGCACGCTTGAATTTGAAACAC
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTT-GCACGCTTGAATTTGAGACAC
EST: gi|351025913|gb|FQ427925.1|FQ427925
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAAAC-CGGCGTGCTTCTTACTACTGGTTATT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATT
EST: gi|351044016|gb|FQ431447.1|FQ431447
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|352798342|gb|FQ480367.1|FQ480367
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351026266|gb|FQ428278.1|FQ428278
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTNACTACTGGGTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|349823406|gb|FQ423217.1|FQ423217
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGA
EST: gi|33404073|gb|CF209700.1|CF209700
EST:     ACGATTACGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351025836|gb|FQ427848.1|FQ427848
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAAACACGGC
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGC
EST: gi|349830206|gb|FQ420466.1|FQ420466
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTTAT-
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGG-TTATT
EST: gi|161715288|gb|FC064876.1|FC064876
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351036393|gb|FQ458768.1|FQ458768
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTT
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT
EST: gi|351042077|gb|FQ456287.1|FQ456287
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: gi|351037820|gb|FQ464261.1|FQ464261
EST:     ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA                         CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttttatcctccatttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaataa