1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctcatatccattctcaattcagaatatgttttggcattcattattaaaccatatgtgctgctaccattttaagccatcaatttatgtgggcat...
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GACACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110716825|gb|EE092144.1|EE092144
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|351015046|gb|FQ444335.1|FQ444335
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGGTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352773448|gb|FQ472230.1|FQ472230
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110365367|gb|EC928242.1|EC928242
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGGTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110715492|gb|EE093605.1|EE093605
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|33405782|gb|CF211409.1|CF211409
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110361886|gb|EC925389.1|EC925389
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGGTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352777103|gb|FQ474410.1|FQ474410
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: GGGTTTACAATTCCAGAGGCTTATGAACGTTTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|30329436|gb|CD012698.1|CD012698
genomic: GGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110364587|gb|EC927954.1|EC927954
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGGTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110384476|gb|EC948916.1|EC948916
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110696408|gb|EE072500.1|EE072500
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGGTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352763934|gb|FQ465384.1|FQ465384
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352777620|gb|FQ466673.1|FQ466673
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTTTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352781379|gb|FQ468223.1|FQ468223
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|71890077|gb|DT039132.1|DT039132
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: GGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|352781474|gb|FQ468318.1|FQ468318
genomic: GGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110416304|gb|EC982275.1|EC982275
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110367670|gb|EC931616.1|EC931616
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|110373098|gb|EC937308.1|EC937308
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATAC GATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
genomic: TATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctc ... ggtttcacagGATACGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctcatatccattctcaattcagaatatgttttggcattcattattaaaccatatgtgctgctaccattttaagccatcaatttatgtgggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccata