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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctctaaacattaatatagatgtctcatattttctttccatgaggtcacattactttaaaacaaaagatgtgtaatttatctgttgtggtttgtctatttacatcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00210.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G22190.2 (Glycine max), 5'ss of exon 14
GGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctctaaacattaatatagatgtctcatattttctttccatgaggtcaca-ttactttaaaacaaaagat-gtgtaatttatctgttgtggtttgtctatttacatcag
||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||| || |||| |||     || |  |  | ||||   | | ||    |  ||   |  | |  || || | |    | ||| | |    | |||| | | |    ||| |              
GGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAGgtatg-----tagagctctaaatagtattattatgaactgcttgagtaggatttcaattgcctcttcagaaaggtttaaatgatttctatatgaatgttag--------------

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G26680.2 (Arabidopsis thaliana), 5'ss of exon 14
GGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgac-ctctaaacattaatatagat-gtctcatattttctttccatgaggtcacattactttaaaacaaaagatgtgtaatttatctgttgtggtttgtctatttacatcag
||  |  |    ||| ||||||||||||||||||||||||  ||||| ||||| |||| |||   | |  |   |||  |||  | ||  |||||||||  |           | ||| | | | |  ||   |||| |  | |||||   |   |||| ||          
GGTATAGTTCAGTTTTTGGTGAATGAAAATGGATTCAACATAGACAGGGTAACCAAGgtatgcttcacgtagtgttatcatactttgttccatattttccatattgtgcaatgctttattctgataataatattgtgga--tgatctgaaatt-cttgtatag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418849|gb|EC985030.1|EC985030
EST:     TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAG                         GCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
genomic: TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctc ... tttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
EST: gi|45770570|gb|CN006422.1|CN006422
EST:     TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAG                         GCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG
genomic: TAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGgcatgacctc ... tttacatcagGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCG