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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgcaagcctttttctagtgtttgcagattttccttttatgaaattgttccagaaaggatcagcttaaatttcaaattggataaaattttcctgagtggaggcatttatttttgggttgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 14
GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgcaagcctttttc-tagtgtttgcagattttccttttatgaaattgttccagaaaggatcagcttaaatttcaaattggataaaattttcctgagtggaggcatttatttttgggttgcag
|||||||| || ||||| ||| | |||||| ||||||| ||||| ||  ||||||||||||||||  ||  |  |   | ||   |    | | |   |||||  | || | |||       || ||   | |      ||||||||    ||    | |      || ||||||          
GTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGgtatgagagaatcctctgtggttcatattaactatttctttat--atttctcccattg----tccgccacact-----gttggataactgattatcaaat-----tatatattttc---------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 14
GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgcaagcctt-tttctagtgtttgcagattttccttttatgaa------attgttccagaaaggatcagc---ttaaatttcaaattggataaaattttcctgag------tggaggcatttatttttgggttgcag---------------------------------------------------------
|||||||| || ||||| ||| | |||||| ||||||| ||||| ||  ||||||||||||||||  ||  |  | | ||||   |    | | |   ||| |         |||||     | |   |  |    || | | |||||||  |||   | |  |   |      |  |   ||||  | |    ||||||                                                         
GTTGGGTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGgtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgca-agcctttttctagtgtttgcagattttccttttatgaaattgttccagaaaggat---cagcttaaatttcaaattggataaaattttcctga---gtggaggcatttatttttgggttgcag-------------------------------------------------------------
|||||||| || ||||||||  |||| |||||||||||||| || ||  |||||||||||||  |    |     |  |  |  |||||   |       |||||||    |  |   |  ||     || |||       |   | ||  | |   || |   || ||   ||||    |   |||  |                                                              
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 15
GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgcaagcctttttctagtgtttgcagattttccttttatgaaattgttccagaaaggatcagcttaaattt-caaattggataaaattttcctgagtggaggcatt----tatttttgggttgcag
||||||||||| || |||||| ||||||| ||||| || || || | ||||||||||||||||      | | |   |    | ||| |   || |||| |  ||||    | ||   | ||       ||| | |||  ||  |   || |||   | |   | ||||     ||| |  |  |||||
GTTGGGTATACACCAGATTATCTGTTCCTGCTGCAGACAATACTGCTATCAGATCCTCAGgta------cttctaaatgacatatgctg---tttctttaa--aaataacccaaggttgtatttctgataatctacaatctgttttttatcttcagtactaatgtcattgtctcattatgtgcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689653|gb|EC942290.1|EC942290
EST:     CTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAG                         GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCC
genomic: CTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgcaagc ... tgggttgcagGGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCC