1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAGgtaagttggtgtgatccataatcatggaggtaatacagaagctttaagtttttaatttattggtgagaaatagattaattataaataatttcatgcag
species | Vitis vinifera |
transcript | Vv13s0064g00560.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAG AGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAAEST: gi|30253039|gb|CB970590.1|CB970590
genomic: TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAGgtaagttggt ... tttcatgcagAGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAA
EST: GAATTTTATGAGAAAAGAAAG AGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAAEST: gi|37187451|gb|CF606804.1|CF606804
genomic: GAATTTTATGAGAAAAGAAAGgtaagttggt ... tttcatgcagAGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAA
EST: TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAG AGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAA
genomic: TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAGgtaagttggt ... tttcatgcagAGAGTTCTATTGGACAATCTTGAACTGGAGCTGTTGAAACTGGAAAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGGAGGAGTTCTTTCATTTGAGACTTGAATTTTATGAGAAAAGAAAGgtaagttggtgtgatccataatcatggaggtaatacagaagctttaagtttttaatttattggtgagaaatagattaattataaataatttcatgcag
- TGGAGG
- - GGAGGA
- - GAGGAG
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA