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AATTCTGTTGGTGAGGAGTCACATCTGGCTATTGAGACTAGTGGCCATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATGgtaggccttttagagaaattgtcattttgaagtatgttttgatatgctagattggtaatccattgatcaagaaagaaatcatttcaaattctaaaatttt...
species | Vitis vinifera |
transcript | Vv13s0019g04370.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATG GTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGTEST: gi|30137604|gb|CB922942.1|CB922942
genomic: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATGgtaggccttt ... ttgttttcagGTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGT
EST: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATG GTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGTEST: gi|30128985|gb|CB914324.1|CB914324
genomic: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATGgtaggccttt ... ttgttttcagGTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGT
EST: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATG GTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGTEST: gi|30298937|gb|CB975731.1|CB975731
genomic: ATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATGgtaggccttt ... ttgttttcagGTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGT
EST: CATACCTCATG GTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGT
genomic: CATACCTCATGgtaggccttt ... ttgttttcagGTCAAGCTCTTAAACAAACTTGCTTCAGCTAGAGCGTCTGGAATAGGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTGTTGGTGAGGAGTCACATCTGGCTATTGAGACTAGTGGCCATGGAGCTCTCAAGGAGAATCACTGGCTTGATGATGGTGCATACCTCATGgtaggccttttagagaaattgtcattttgaagtatgttttgatatgctagattggtaatccattgatcaagaaagaaatcatttcaaattctaaaatttt
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa