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CATCTGCCACGTTTATGTCGACAAGTCTGCTAATATGGATACTGCAAAGCACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttccataatcttttgactgataatgttaggttgaataatacttttgaatagtgtccaaatgtttcagccactttttcacagcatttttctgttcc...
species | Vitis vinifera |
transcript | Vv13s0019g02360.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CCTGCAGCCTGTAATGCAATG GAANCTCTTCTTGTACCCAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|33402185|gb|CF207812.1|CF207812
genomic: CCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|33402196|gb|CF207823.1|CF207823
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: TTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110377214|gb|EC942273.1|EC942273
genomic: TTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: TGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110365796|gb|EC929255.1|EC929255
genomic: TGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|33402539|gb|CF208166.1|CF208166
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110362804|gb|EC926359.1|EC926359
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110382148|gb|EC938618.1|EC938618
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110375487|gb|EC940476.1|EC940476
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110388887|gb|EC953685.1|EC953685
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|29783302|gb|CB349405.2|CB349405
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110414936|gb|EC980800.1|EC980800
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAGEST: gi|110421820|gb|EC988122.1|EC988122
genomic: ACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
EST: GCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATG GAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
genomic: GCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttcca ... ttatttgcagGAAACACTTCTTGTACACAAGGATTTAGTGCAGACTGGTGGCCTCAATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTGCCACGTTTATGTCGACAAGTCTGCTAATATGGATACTGCAAAGCACATCGTATTGGATGCAAAAGTAGATTATCCTGCAGCCTGTAATGCAATGgtaatttccataatcttttgactgataatgttaggttgaataatacttttgaatagtgtccaaatgtttcagccactttttcacagcatttttctgttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG