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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTGGAGGTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctccagcctagtactgtgagttaacaatttgcatcatggatagacatatcattctaggcataaaaacagctttttttttctgttcttatttttc...

Basic information

species Vitis vinifera
transcript Vv12s0057g01200.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352790687|gb|FQ475445.1|FQ475445
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|30130059|gb|CB915398.1|CB915398
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGA
EST: gi|110368276|gb|EC932247.1|EC932247
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|110361968|gb|EC925474.1|EC925474
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|26259676|gb|CA810739.1|CA810739
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|110361336|gb|EC924802.1|EC924802
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|110362059|gb|EC925566.1|EC925566
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|110357331|gb|EC920800.1|EC920800
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GGCAGTTATGAGTGCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCA
EST: gi|32246227|gb|CD712046.1|CD712046
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|33403297|gb|CF208924.1|CF208924
EST:     GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA
EST: gi|110723122|gb|EE100072.1|EE100072
EST:     GTGGTGCATCANCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTG                         GCCAGTTATGAGTGCAAGAGCCTGGGAGAGATGAATCTCCATCATCCGCCA
genomic: GTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctcc ... cttgctgcagGCCAGTTATGAGTGCAGGAGCCTGGGAGAGATGAATCTCCATCACCCGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTGGAGGTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTATATTTGgtgagtctccagcctagtactgtgagttaacaatttgcatcatggatagacatatcattctaggcataaaaacagctttttttttctgttcttatttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa