Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAGgtatccttgttgtcggctcatatccccatagaagaatattctcttaaatatgctggtttttgtag

Basic information

species Vitis vinifera
transcript Vv11s0149g00130.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 14
GTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAGgtatcc----ttgttgtcggctcatatccccatagaagaatattctcttaaatatg--ctggtttttgtag-----------------------------
|||| | || |||||||||||  |||| || ||||| || ||||| || ||| | ||| | ||||||||| ||||||| |||||||||||||||| |     |||| ||   | || | |  | |   |  |   |  ||| || ||  |||||| |  | |                             
GTATTTGCAATATTGTCGAACTCAATGCCACCCTCGTCTATCAGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtattcatgaatgttttcaattaatgtacagaaatttgtttcggcctttagatttgatctggttatattggaagttgaagatgtttgaaacccattgttt

upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G11220.1 (Glycine max), 5'ss of exon 14
GTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAGgtatccttgttgtcggctcatatccccatagaagaatattctct------taaatatg--ctggtttttgtag----------------------------
|||| |||| |||||||||||  |||| || ||||| || || || || ||| | ||| | ||||||||| ||||||| ||||||||||||||||| |   | |    ||| ||     ||||  ||| |  | |      || || ||  |||||| ||| ||                            
GTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaatatgttttca-attaatgtagagaaatttgttttggcctttagatttgatctggttattgaagatgttggagaccattgggtctttttttt