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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAAACTTTCCTTTTGAAGAGGTTTGGTTGGCAATGGAAGTATGAAAATTGCCAGGATCTTAGAAAATTTTCCATTCTTCGTGGGCTCTGCCACAAGgtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcag

Basic information

species Vitis vinifera
transcript Vv11s0037g00840.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA04G24430.1 (Glycine max), 5'ss of exon 11
GGTGGAAACTTTCCTTTTGAAGAGGTTTGGTTGGCAATGGAAGTATGAAAATTGCCAGGATCTTAGAAAATTTTCCATTCTTCGTGGGCTCTGCCACAAGgtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcag
||| ||||  |||||| ||||||||||||| || || |||||| |||||||| | || ||| | ||||| ||| ||||||||||||| ||||| || ||||||  | ||   | || |||  |   || |      | | |||    ||   |||  || || ||||    ||| |||    || |||  |||
GGTAGAAAACTTCCTTCTGAAGAGGTTTGGGTGTCAGTGGAAGGATGAAAATGGTCAAGATTTAAGAAAGTTTGCCATTCTTCGTGGACTCTGTCATAAGgtaaat-gaaaggcccactctgtaatacattgatattgatcactttatgc-cactgttaattcaatt----aagagaa----tcctttaacag

upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA06G30000.1 (Glycine max), 5'ss of exon 12
GGTGGAAACTTTCCTTTTGAAGAGGTTTGGTTGGCAATGGAAGTATGAAAATTGCCAGGATCTTAGAAAATTTTCCATTCTTCGTGGGCTCTGCCACAAGgtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttttaagtgaaatcatcttttctcag
||| ||||  |||||| | ||||||||||| ||||| |||||| |||||||| |  | ||| | ||||| ||| ||||||||||||| ||||| || ||||||   |||   | || |||  |   || |  | ||     |         |  ||| |||   |  ||| |                     
GGTAGAAAACTTCCTTCTAAAGAGGTTTGGGTGGCAGTGGAAGGATGAAAATGGTAAAGATTTGAGAAAGTTTGCCATTCTTCGTGGACTCTGTCATAAGgtaaaatgaaaggcccactctgtaatacatt-gatcactttatgccactgttgtttcaattaagagatttaacag------------------

upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 5'ss of exon 14
GGTGGAAACTTTCCTTTTGAAGAGGTTTGGTTGGCAATGGAAGTATGAAAATTGCCAGGATCTTAGAAAATTTTCCATTCTTCGTGGGCTCTGCCACAAGgtatcttgacttggcctctcactgggacttgaggtcttaccacagggtgaatacttctattttaattttt-taagtgaaatcatctttt--ctcag
||||||||| ||| |||  ||||||||||| ||| | |||||| |||||   |||||||| || |||||||||||||||||| | || || |  |||||||| |           || ||| ||  | |||     || | | |   ||| ||  |    |   ||| |  || ||   || |    |    ||||
GGTGGAAACGTTCATTTCCAAGAGGTTTGGGTGGGATTGGAAGCATGAAGGCTGCCAGGAACTGAGAAAATTTTCCATTCTTAGAGGACTGTCACACAAGgtttgcaa-------ctgtcagtgaaatttg----ttttcaataa--tgactatctaacctgagattctcatatgttgcattactcatcggttcag