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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04180.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 5
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
||||| |||||||| |||||||||||||||||| |||||||||||||  | ||||| ||||| || |||||||||||||| |||    | ||||| |     | |    |  | |||  | |||  | |    |    |||| |   |    || |||  ||                                                 
AATCTCTATTGGGCCGATAGTGGTGATTTAGTGACAATTGCAAGTGACACCTCATTCTACATTTTGAAGTACAATgtaagtttttctgcattttgttggctctgtagttcaatgatgtaacatctacttgatgtaactataacac--aacaattataccttccag----------------------------------------------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctc--ttatcccacttttatgagaaatcatcatagatttgt-cataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
|| ||||||||||||||||| |||||  |||| ||||| ||||||||| ||||||| |||||  | |||||||| ||||| | |     | | |   | |   ||||   | || | |           ||   ||  | | | |||  | ||  |||||| ||    |||  ||| ||   | | ||     || |                 
AACCTTTATTGGGCTGATAGCGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATACTGAAGTACAACgtaagttattgtattatctaaatgttcattatgttatttcttttctcctcttgaatgtgttattgcgtgaaagttcttt-ttttaccatggcatgaagttatgtttgtaatttgtgttcctacag--------------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
||  |||| |||||||||||||||||  |||| ||||| ||||||||| ||||||| |||||| | |||||||||||||| |              || | |  ||  |   |||| |       |  |   ||| || |    | ||  |   ||   ||    ||   |||   ||   |  | || |  | || || || || |    
AACGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaagat-------------attgtatcgtcaaatgattatta-----tcttgtttctttttcct----tttacccaccttgtgat-gcatggcgttataaacaaaa--tgactatgatatgtgctttttag----

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagct-ttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
||| |||| |||||||||||||||||  |||| ||||| ||||||||| ||||||| |||||| | |||||||||||||| | || |  | |        | |||||    || | |         | |   |  |       |   |     || ||  |  |   ||||||  || | |  |                            
AATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaagatattgtatcctcaaatgattattatctagtttctttttccttcttttacccacctccttgtgatgatggggattataacacaaaacgagattt-gtgctttgcag--------------------------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 15
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagct----ttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaac-caaatatgtttatttggcag----
||| | ||||||||||| ||||||||||| ||| |||| ||||| ||||| ||||| ||||| || ||||||||||| || |    ||| |   || | | |    ||   |||  || |     ||  |  | | ||   || | | | |||||        |  ||   |      ||   | | |||  ||| ||| | |   |   |  ||     
AATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCGTCATTCTACATTTTGAAGTACAATgtgagttaattttcacatattgtagatactgtagatcacagtttttt---attgtgctgg-ttaagcacatattgtattctgcaactgacaatggtatgccttgtctattatttactaacgcaactctaacttgataacatctag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag------------------
|||||||| |||||||| ||||||||||||||  |||||||||||||| | ||||| ||||| || || || ||||| || | | || || | |   |  | |||      || |      |    |||  | |  |  |      | ||  | | | | | |   || ||||  |  ||     ||     |||| | || ||     ||                  
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcactgtcttaattgcctatgttcagttgacctttcagttacatccactattttttgtcctttttaatgtcaaattaagaagaaattatttttctggtcaaattg--aaatgtattaatacaaaagtttccttttatcttgtag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctc----cctttttggttctct-----tatcccacttttatgagaaatcatcatagatttgt---cataaaatctattcgttttacaatcatttga---gattaagt--acctcacttaacaaccaaatatg--tttatttggcag
|||||||| |||||||| ||||||||||||||  |||||||||||||| | ||||| ||||| || || || ||||| || | | ||    |||| ||  ||  ||      |  | || ||| ||  | |||  ||  |||||||     | |  || | |       |||||||||     | | || |  || |    |||||   || | |   ||||| | | ||
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcattaccttattaattgcctatgttcagtcgacctttctgttacatc--cactgatttgtgtcttttatgtcaaattaagaagcaatcattttttctggtcaaatggacatgtactaacacaaaagtttccttttatcttgtag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccac-----------ttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaaca-accaaatatgttta-tttggcag------
|| || || ||||||||||| |||||||||||| | ||||| |||||| ||||||| || ||| | ||||||||||| ||  ||||   |  |||   || ||||   ||           |||||||| ||| |||| |   |||  |    |   | || |||  |  |  || |||    |  ||| |     | || |  ||| || || | ||     |      
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgt---tttcccccctatgtttttggttaaatgaatatctgatggcacttac-tagtgaagcacagtaaacattttaacttccattgttgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 3
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
|| || || |||||||||||||||||| ||||| | ||||| |||||| ||||||| || ||| | ||||||||||| ||  ||||   || |     | |    | | ||| | |      | |  ||  || | | ||   |  || | ||    || |      |  |||| | || |  ||  ||                      
AACCTCTACTGGGCTGATAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATCCTGAAGTACAATgtgaggattctaaattgtcccccccccc-cctctcttatgtttttggttaa-atgaatatctgatggcacttactagtgaagcactgtaaacattttaacttccactgttg-cag---------------------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctcc----ctttttggttctcttat-----cccacttttatgagaaatcatcataga--tttgtcataaaatctattcgttttacaatcatttgagattaagta---cctcact--taacaacc---aaatatgtttatttggcag--------
|| || || |||||||| ||||||||| ||||  ||||||| |||||| ||||||| |||||  | ||||||||||| ||  || ||     |||  |  ||  |||||         |||   |   | | ||||  |     |   |  || |   |  |  |||    | | |  | |||  |||   | | |||  ||    ||   ||| || || | ||  ||         
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttc-cattattgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaag--ctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
||||||||||||||||| |||||||||||||| || ||||| |||||| | ||||| |||||||| ||||||||||| ||    |  ||    |    |  ||   |   | ||| ||    | |  || | ||||  ||| |||   || ||    |    |   | |  ||||                                      
AATCTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCTTGAAGTACAATgtgagaatctgttcaacctcaaatgttcagctattattttcattcccactt-tcgtggattgttca-aaagcttactc----tggtgttcctcgctattacag-----------------------------------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 18
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccacttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
|||||||||||||| || ||||||||| |||| |||||||| |||||| ||||||| |||||| | |||| |||||| ||  |  |   |      |  |  |   |||    | |   | ||   | ||| ||  |     | |    | | | | | |  |  ||   |||||    |  ||||     |   | |             
AATCTTTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCTTAAGTTCAATgtgaggatcttttttaaaccttggtagtgagccagaactcttgtacatttccttagtttattttcctagtactgttgctgttcgag-acatggttttaagctgttttcttactgttctgctgtag-----------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 14
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatccc----acttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaacaaccaaatatgtttatttggcag
||||| ||||||||||| |||||||||||||| || ||||| |||||  ||||||| |||||||| || | ||| || ||  | ||  |         ||||||| |     | || |||  |  ||  |||| ||||   ||     |    | || ||    | ||                                               
AATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCATTGCTAGTGACACATCATTCTACATCTTGAAATTCAACgtgaggatcctgtccaacaaacactcttatgctgtgaatttctatatgcgat--tcatggattgtccaagtgctaacatggtgttcttgttatacag-------------------------------------------