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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTTTTGTGAAGAGAAATGTGGTGGAAACCAAAGGGAGATCACTCCAAGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttcaccatttgaatgatatctggttgaacaaagttcagttttaagttctggacaaaatttgcatttgtacttgaagtctgcaactatgcccattgcgcaaaaaagattcgactcctatacaaagattgaagcatatattttctgttgatgccatgaaacatatttgtgtgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|225387971|gb|GO307562.1|GO307562
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|110362156|gb|EC925672.1|EC925672
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|30127060|gb|CB912399.1|CB912399
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|110367100|gb|EC931022.1|EC931022
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|110399825|gb|EC966355.1|EC966355
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|110409716|gb|EC975386.1|EC975386
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|83275659|gb|DV939667.1|DV939667
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|32460704|gb|CD801878.1|CD801878
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
EST: gi|110406856|gb|EC972443.1|EC972443
EST:     AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTG                         GGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA
genomic: AGAAATAGAGATAGCACTTCTTCCACAAGAATAAAGGCATTCTTTTCCTGgtaaaatttc ... ttgtgtgcagGGAGAGTGGAAATTAGGGCAAGGCAAGGTAAAGACTTCATCCAGCTTAGCA