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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAACACTGCACATCATGGACATACCAACAAAATTGGTCCTTCAAGCAGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatctggtctatacttgtctgggagtagattctttctaatttgtagttgcacaagcacatgtcagtgagtattgtttgactaaatattgctcttttttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03460.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409662|gb|CF215289.1|CF215289
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|33409255|gb|CF214882.1|CF214882
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|32457847|gb|CD799021.1|CD799021
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|110711458|gb|EE087963.1|EE087963
EST:     GCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCCAAGTGATCA-TGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCAC
genomic: GCTGGATTTCATCTTTACAGCGTATTTCTTCTTCC-AAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCAC
EST: gi|45770598|gb|CN006450.1|CN006450
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|30326334|gb|CD009596.1|CD009596
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|30330426|gb|CD013688.1|CD013688
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|45368334|gb|CK906693.1|CK906693
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|22013179|gb|BQ798213.1|BQ798213
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|27586446|gb|CB009141.1|CB009141
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|351022776|gb|FQ428685.1|FQ428685
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|83275029|gb|DV939125.1|DV939125
EST:     AGCTGGATTTCATCTCTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|83275748|gb|DV939756.1|DV939756
EST:     AGCTGGATTTCATCTCTACAGCGTATCTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|45770435|gb|CN006287.1|CN006287
EST:     AGATGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
EST: gi|30329964|gb|CD013226.1|CD013226
EST:     AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTG                         CTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA
genomic: AGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatct ... cttttttcagCTATAGGTTTGGTTGAGACTTGAGAAGATCACAGTGACACATCTGTGGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACAAACACTGCACATCATGGACATACCAACAAAATTGGTCCTTCAAGCAGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGATCAATGTGgtaattatctggtctatacttgtctgggagtagattctttctaatttgtagttgcacaagcacatgtcagtgagtattgtttgactaaatattgctcttttttcag

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