Sequence
atgc intronic sequence ATGC exonic sequenceGCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttctggttttgtgctttctctttttctatttctattttttttacctctagcatatggtcccctttattttaggtaacacaaatatattgccaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os01g54119.1 (Oryza sativa), 5'ss of exon 14
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgt--actgttctggtt--ttgtgctttctctttttctatttctattttttttacctctagcatatggtcccctttattttaggtaacacaaatatattgccaat
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GCTGAGTTACAGAAGATGAGAGTTGAAATGGCTGGAATGAAACGAGATGCAGAGCATTATTCCAGACAGgtgaacttgtctcgctggtcattgatgttattttgttaacactagccaaattattgtt-gcaaatattggaccttagattgaatgggccaactgg---gccaaa
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G055219_T01 (Zea mays), 5'ss of exon 14
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgt-tctggttttgtgctttctctttttctatttct-attttttttacctctagca----tatggtcccctttattttaggtaacacaaatatattgccaat-------------------
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GCAGAGTTGCAGAAAATGAGAGTTGAAATGGCTGGAATGAGAAGAGATGCAGAGCATTATTCTAGACAGgtgaaatatttgttactatgttgtttatgttacttttcttgaccataaccaagtcttacagatttaggatattaaaattcctgcggagcacttattttttgtgaatgtttcttcttttttatcag
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA01G01230.1 (Glycine max), 5'ss of exon 16
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttctggttttgtgctttctctttttctatttctattttttttacctctag-catatggtcccctttattttaggtaacacaaat-atattgccaat
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GCTGAAATGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAGAGGGATGCTGAGCATTACTCACGTCAGgtaataaaacctccttgtttcttaagtaggaagagcttaagacttaatggtcatactcataccactgccttactagtgaaattttcaagttatgccctca--
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA16G08430.1 (Glycine max), 5'ss of exon 14
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttctggttttgtgctttctctttttctatttctattttttttacctctagcatatggtcccctttattttaggtaacacaaatatattgccaat-----
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GCTGAAATGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAGAGGGATGCTGAGCATTACTCACGTCAGgtaataatcatagtgtttctgtaaaaaatttct-cttgtataaaatttaaattcacaaattgga----ttaaaaataaataaaacctccttgtgtcttaagtggg
upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT2G19950.2 (Arabidopsis thaliana), 5'ss of exon 14
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttctggttttgtgctttctctttttctatttctattttttttacctctagcatatggtcccctttattttaggtaacacaaatat-attgccaat
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GCTGAAATGCAAAAGTTAAGGGTTGAAATGGCAGCCATGAAGAGGGATGCAGAACATTACTCACGCCAGgtaatattatcagtttctgagagtctgtcttttcttgtcaatgtattaacagtttctg-attttttcgtttctcctagtctatacttatgggacttcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404538|gb|CF210165.1|CF210165EST: GAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAG GAGCATATGGAGCTGGAGAAACGCTACCGTGAACTAACTGACCTATTG
genomic: GAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttct ... tttccaatagGAGCATATGGAGCTGGAGAAACGCTACCGTGAACTAACTGACCTATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGAATTGCAAAAAATGAGAGTTGAAATGGCTGCCATGAAAAGAGATGCAGAGCATTATTCACGTCAGgtactgttctggttttgtgctttctctttttctatttctattttttttacctctagcatatggtcccctttattttaggtaacacaaatatattgccaat
- - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa