Sequence
atgc intronic sequence ATGC exonic sequenceCTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os02g09740.2 (Oryza sativa), 5'ss of exon 14
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccattt-ttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CGGAGTTTGCCATGTCAGGAATTTATACCGTAAAGAGTGATGTGTACAGTTTTGGAGTTGTGATGTTAGAGCTATTGACAGGGCGGAAACCACTAGACAGgtatg-cttctagtttatattcaaatcccggtgcattgcgttttataaattgaaaatgaccttctgatggatattgcag-------------------------------------------
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 14
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CAGAGTTTGCCATGTCAGGAATATATACTGTAAAAAGTGACGTGTACAGTTTTGGAGTAGTGATGTTAGAACTATTGACAGCACGTAAACCGTTAGACAGgta---cat-taccttattatttcagagctagtaa-gtagtaagaaaatgagtaatgtatttcttta--ttagtaacttcaaggccgtcat-tcattcttgtgttgcaatgtgcag-----
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G071573_T01 (Zea mays), 5'ss of exon 14
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgc----tacattgctgaacacccatttttgtgttcttgaaatatttta--tagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CTGAGTTCGCCATGTCAGGGACGTACACTGCCAAGAGTGACGTGTACAGTTTCGGGGTAGTGATGCTGGAGCTGTTGACCGGCCGCAAGCCGCTAGACAGgtaacaaatctagcgagtactgtactgcatgcagctgctggagctggtagatgaatgaagctgacaattctgaataactagctagctgtacgcgtgcgcgtgtgttttact-ttatttatttaccag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 14
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatt-tttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CTGAGTTTGCATTATCTGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAACTATTGACTGGTCGGAAGCCACTTGACAGgt-gagcctaccatac-ttgatgtaaagaaatcatgtccatcacttaaatgttt-atccttcattattatctttcttttctgtatggcttcttacattcatttgtaatttttgcaagtttag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 14
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacat--tgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAACTATTGACTGGTCGGAAGCCACTTGACAGgt-gagcctatcgtacatgatgtaaagtaatcatgtccatcactttaatgtttaccctt-cattatt--atctttcttttctgtatggcttcttacattcatttgtaatttttgcaagtttag
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ07060 (Selaginella moellendorffii), 5'ss of exon 4
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CGGAGTTTGCCATGTCTGGCGTGTACACTGTCAAGAGCGATGTTTACAGCTTTGGAGTGGTGATGCTGGAGCTTCTAACCGGAAGAAAATCGCTAGACAGgtaaaatct-tgaagttcttccatccaag-agttttatgtaagtaagctccaaacttgaaacttccag-----------------------------------------------------
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ37538 (Selaginella moellendorffii), 5'ss of exon 13
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CTGAGTTTGCAATGTCTGGTGTTTATACCGTTAAAAGCGATGTGTACAGTTTTGGAGTGGTGATGCTGGAGCTACTGACAGGGCGTAAGCCTCTGGACAGgtaagg--tttcctagttttcaaggttatatgttccattagctaaagaggtgttctattcag-----------------------------------------------------------
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ34030 (Selaginella moellendorffii), 5'ss of exon 4
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CGGAGTTTGCAATGTCTGGTGTTTATACCGTTAAAAGCGATGTGTACAGTTTTGGAGTGGTGATGCTGGAGCTACTGACAGGGCGTAAGCCTCTGGACAGgtaagg--tttcctagttttcaaggttatatgttccattagctaaagaggtgttctattcag-----------------------------------------------------------
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ18843 (Selaginella moellendorffii), 5'ss of exon 4
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
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CGGAGTTTGCCATGTCTGGCGTGTACACTGTCAAGAGCGATGTTTACAGCTTTGGAGTGGTGATGCTGGAGCTTCTAACCGGAAGAAAATCGCTAGACAGgtaaaa-----gct-------tgaaga--agttcttccatccaagagttttatgtaagtaagctccaaacttgaaacttccag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33410441|gb|CF216068.1|CF216068EST: TTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAG TTCAAGGGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACT
genomic: TTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatg ... tgtgttttagTTCAAGAGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTGTTGACAGGTCGGAAGCCCCTGGACAGgtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT