Sequence
atgc intronic sequence ATGC exonic sequenceCTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaatgttattttcagtga-gaatcaatgaagcatggtgttccacagtttttgggata
||||| ||||| || |||||||| ||||| ||||| |||||||||||||| || |||| || || |||||||| || |||||| ||||| || |||||| ||| | | | | || | || ||| | || | | | | || | | | | ||||
ATGTGCCCAGCTTGTCTTTGCACCCATTGACGAATCTTTTGCTGATGATGCACCACTGCTACCCTCAGGCTTCCGTGTGATACCACTGGATGGCAAGACGgttagtgtaatttcttttgctc--tggcagctggatcttgtccgatcgcctaaactaaacaatggttcggtattatgtaccctactacag-----------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G178102_T01 (Zea mays), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtga-----agctctatacattgaatgc-tattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata
||||| ||||| || ||||| |||||||||||||| ||||| || ||||| || |||||||| || |||||||| || ||||| | ||| |||| ||||| || | ||| || ||| | | | | | | | || || | | | | || | | | | |||
GTGTGCACAGCTTGTCTTTGCTCCTATTGATGAATCTTTTGCCGACGATGCACCGTTGCTGCCCTCAGGCTTCCGTGTGATACCGCTTGATGCTAAGACGgtgagtatttgtcggatctgtatattcactccctcctggtgtcacatcttacccgtgccttgccacactgtttcctttaacacaatacccaaatgaaattgtag--
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 13
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgt-----gaagctctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata
||||| ||||| || || || ||||| |||||||| |||||||| ||||| || ||||| || ||||||||||| || ||||| | ||| |||| ||||| || | || |||| ||| | | | || | || | |||| | | | | | || || || | |
TTGTGCACAGCTTGTCTTCGCTCCTATCGATGAATCTTTTGCTGACGATGCACCGTTGCTACCCTCTGGCTTCCGTGTGATACCGCTTGATGCTAAGACGgtgagtatatcggagatctagacagtcagtcctggtgtcac----------gtattatccttgacaactgtttaaggtacaacacattatgcactcaaactgcag
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaat--gttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata----
||||| ||||| || |||||||||||||||||||||||||| |||||||||| || ||||| ||||| ||||| |||||||||||||||||||||| ||| |||| | |||| | | | ||||| || ||| || | || | | | | | || | ||||| | |
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttct--cattagct----tgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaag---ctctatacattgaatgctattaccatt-ttggagaaaatgttattttcagtga--gaatcaatgaagcatggtgttccacagtttttgggata
||||| ||||| || ||||||||||| |||||||||||||| |||||||||| || ||||| ||||| |||||| |||||||||||||||||||||| ||| ||| ||| || | || | | | | |||| | | |||||||| ||| | | || |||| | | ||
ATGTGCACAGCTTGTGTTTGCACCTATCGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACAgttagtggcatttctcagtagctcgatagttttgaagggaattggtcatgaagttattttgtttgattgctcttcttttttttgttgtttaattgccatt------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttg--tgaagctctataca--ttgaatgctattacca--------ttttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata------------------------------------------------------------------------------------
|||||||| || || ||||||||||||||||| ||||||||||||||||||| || ||||||||||| || || ||||| || |||||||||||| | ||| | | ||| | | || ||| | || | | | || | | ||||| || | || | | | || || | |||| | ||
ATGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCATTTGCTGATGATGCTCTGTTACTGCCATCTGGTTTTCGTGTCATTCCGTTGGATCCTAAATCAgttgagtttcatttctttgcgacttttatgattttcctagagcttggtcatgaaactactgttaattactttgcctgtaatttggaaatttggtactttagttctcatcctagtctccaaggttatgatagtataatccaattggcagataagaatctgttgtaatgtttcttatcccattacttttacatctcag
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgttt-gtga-agctctataca--ttgaatgctatt-----accattttggagaaaatgttattttcag--tgagaatcaatgaagcatggtgttccac-agtttttgggata-------------------------------------------------------------------------
|||||||| || || ||||||||||||||||| || |||||||||||||||| ||||| |||||||| || || ||||| || |||||||||||| | ||| |||| | ||| | || ||| ||| | || | | | | |||| | | || | | || | | | ||| | | | | ||| | |
ATGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCCTTTGCTGATGATGCTCTGTTGCTTCCATCTGGTTTTCGTGTCATTCCGTTGGATCCTAAATCAgttgagtgacatttcttttcaacttgcatgattttcgtatagcgtggtcatgaaactactgttgttaatttggaattttgctacttatgttctcatgctaatttccaaggttatgatagtataatccaattggcagatacatacctgttggaatgttccttatcgcattatttcttgcatctcag
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 14
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata----
|||||| || ||||| || || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||| | || | ||||| || | || | ||| || || || | || || ||| || | || || | | | | | || | | |
------TCAGCTTGTCTTTGCCCCAATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCTGGTTTCCGTGTCATACCACTCGACCAAAAAAC--------AAATCCGgtaaaaagaaaactgtt--tatgataagaaatttgatatcttgaaattgacacagtcctttttcttttattcctgtatgtaacgttacag
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagc-tctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata
||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| || || || |||||| ||||||| | || | ||| | | | | | | | | | || | | || | | | | | || | | | || | | | | | ||| || | |
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatattcta-aatttctaatccttcactgtcatatag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30256255|gb|CB972098.1|CB972098EST: CTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACG GATGGACCTGCTGCTACTAGGACATTGGATTTGGCCTCTACACTTGAAGTG
genomic: CTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaag ... tgtactgcagGATGGACCTGCTGCTACTAGGACATTGGATTTGGCCTCTACACTTGAAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaa