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CAGCTGGTGGTGCCTGGGACAATGCAAAGAAGTATATAGAGACGGGCGCGCTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctcattcctgcttactggggggtagtcaaatgaatttcttgctcctcgtttgttaatccaagggtctatagcggctgttgggtaatgttttcca...
species | Vitis vinifera |
transcript | Vv09s0054g00700.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACAC TGTGGGAGACCCCTTCAAAGACACGGCCGGACCGTCCCTCCATGTCCTAATEST: gi|110425794|gb|EC992186.1|EC992186
genomic: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctca ... tggtgtgcagTGTGGGAGACCCCTTCAAAGACACGGCTGGACCGTCGCTCCATGTTCTAAT
EST: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACAC TGTGGGAGACCCCTTCAAAGACACGGCCGGCCCGTCCCTCCATGTCCTAATEST: gi|254914984|gb|GR904415.1|GR904415
genomic: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctca ... tggtgtgcagTGTGGGAGACCCCTTCAAAGACACGGCTGGACCGTCGCTCCATGTTCTAAT
EST: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACAC TGTGGGAGACCCCTTCAAAGACACGGCCGGACCGTCGCTCCATGTCCTAATEST: gi|30132313|gb|CB917652.1|CB917652
genomic: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctca ... tggtgtgcagTGTGGGAGACCCCTTCAAAGACACGGCTGGACCGTCGCTCCATGTTCTAAT
EST: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACAC TGTGGGAGACCCCTTCAAAGACACGGCCGGACCGTCCCTCCATGTCCTAAT
genomic: CTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctca ... tggtgtgcagTGTGGGAGACCCCTTCAAAGACACGGCTGGACCGTCGCTCCATGTTCTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTGGTGGTGCCTGGGACAATGCAAAGAAGTATATAGAGACGGGCGCGCTTGGAGGCAAGGGAAGTGATGCCCACAAAGCTGCAGTTACCGGAGACACgtaagtctcattcctgcttactggggggtagtcaaatgaatttcttgctcctcgtttgttaatccaagggtctatagcggctgttgggtaatgttttcca
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa