Sequence
atgc intronic sequence ATGC exonic sequenceAGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 15
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttg-gtttactcttaccca--tttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGgtaatatatattctcagctaggtctccttgtgtta----ttttgagtcttgctgtgcagttaaattatactttctttt---cataccaacgtacaaatatttttt--ggctatgactatac-----tacag
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G00880.1 (Glycine max), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttg-gtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AGATAAAAGCATGGTTATATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGACGTTGGTGTACAACCATGGCCTATAGTGCTGATGGTACAAGgtcccatatactcaactgtggctacttgtattattgaattatactatctgttt-tgatctatttttgcccaaacattttt-ttttggcctgaatgtattttatag------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G44420.2 (Glycine max), 5'ss of exon 15
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AGATAAAAGCATGGTTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGACGATGGTGTACAACCATGGCCTATAGTGCTGATGGTACAAGgtttatatacccaaccatggctacttgtattattgaattatactatctgttt-tgatctatttttgctcaaacattttctttttggcttgaatgtattttatag------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttg--ttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AGATAAAAGCCTGGCTCTATGATCTTCTTGGTTCTAGAGTTGACTATGATGCACCAGGGCATTGGTGCACTACAATGGCTTACAGTGCTGATGGCACTAGgtatgtagaaccttg---attcgccttttatacgtgtcaaagttgtttggtttaattcactaaatgctccatctaaaatggatgtttgtggttgccatctgga---------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgt-tggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AGATAAAAGCTTGGCTCTATGATCTCCTTGGATCTAGAGTTGACTACGATGCACCTGGTCATTGGTGCACTACAATGGCTTACAGTGCTGACGGCACTAGgtattccaaactttaatctcctttcttacgttttgaa--------gttatttggtgtgcacaactaaacgctctatcca-agatcaatgtgcgtggttttcttgtagca--------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgcta-caagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCGGATGGAACAAGgt----ttgcttcaacc--tttggtatttccatcacatcct--ttgttttccag---------------------------------------------------------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ37833 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AAATCAAGGCGTGGCTGTACGATTGCCTTGGTTCACGGGTTGACTATGATGCGCCTGGAAGTTGGTGCACAACAATGGCCTACAGTGCTGATGGCACAAGgtttgtctcgttcgtctcgttt-ctatcgtaagacacgcgctaaacgaggctatgtgttttgtag---------------------------------------------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ32018 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AAATCAAGGCGTGGCTGTACGATTGCCTTGGTTCACGGGTTGACTATGATGCGCCTGGAAGTTGGTGCACAACAATGGCCTACAGTGCTGATGGCACAAGgtttgtctcgtttgtctcgttt-ctatcgtaagacacgcgctaaacgaggctatgtgttttgtag---------------------------------------------------------------
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 14
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
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AAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCGGATGGAACAAGgt----ttgcttcaacc--tttggtatttccatcacatcctttgtttttccag---------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857073|gb|DT006128.1|DT006128EST: GCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAG GCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATG
genomic: GCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttac ... atatttacagGCTCTTTTCATGTGGAACAAGTAAGGATGGGGATTCATATATCGTTGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATAAAAGCATGGTTATATGATAACTTGGGATCTCGAGTTGATTATGATGCTCCAGGTCGCTGGTGCACAACAATGGCTTACAGTGCAGATGGTACAAGgttggtttactcttacccatttgctagtgctacaagtcctcatcatttgttggtgtgccaatcagaattattgatgagtattttgatgtttaccttttctttcgggtggtgggttttcatatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG