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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03740.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 14
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||| ||        |||||| | || || |    |||| ||  |  |   ||||||    |    ||||| |   ||   |     | |  |||||
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgc--------cacattcattgatgaaccgatttatttgtttgtatttttttccgacaagaatctttgaattattgctaagaaagttttgcag

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 14
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcct-ttttctttgacttttctttaatcaatgaattgtccaatgatgcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||| ||        | |||  | ||||  ||   |||| ||  |  |   | ||| |    |   |   ||||| | ||   ||   | |  |||||
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgc--------cccatacattgttaaatcaatttatttgtttgtatttatttccaacaagaatctcttaattattgctatgaa-atttttgcag

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 15
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgat-gcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||| | |||||||| ||||||||||| |||||||| ||||| |||||| || |   | ||| |     ||||| |       || || | ||   |||| |    |   |  |||||| | |  | | | ||||  |  |||
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatac--gttgttgaacc-----agcttattttattttttccgacaagaatcttttaattatt--actatgcaattttcacag

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 14
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||  | |||||||| ||||||||||| |||||||| ||||| |||||| || |        |||  | ||||| |     ||| ||  |  |   |||| |    |   |  |||||| | ||   || | | |  |||||
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTCCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgt--------catacattgttgaaccagcttatttgtttgtattttttccgacaagaatcttttaattattgctatg-caatttttgcag

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G52150.2 (Arabidopsis thaliana), 5'ss of exon 14
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag
|||||| ||||| ||||||||||| || || ||||| ||||| ||||||||||||||  | |||||||||||||| || |||||||||||||| |  ||||| |  |   || | |  ||  ||||   | || | || | |       |   |||||   |||||||| || |||  ||                
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataa--aagttatgttttctgtccaagtcttctattatt------cagattcttaagcttttcttgaaccaaaaaag---------------

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G52150.1 (Arabidopsis thaliana), 5'ss of exon 14
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag
|||||| ||||| ||||||||||| || || ||||| ||||| ||||||||||||||  | |||||||||||||| || |||||||||||||| |  ||||| |  |   || | |  ||  ||||   | || | || | |       |   |||||   |||||||| || |||  ||                
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataa--aagttatgttttctgtccaagtcttctattatt------cagattcttaagcttttcttgaaccaaaaaagcag------------