1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGTGTTGCTCTATTGTATGCCACAAAAGTTCTGGAAAACATTCAGACTTCAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGGTCTTAAGgtgtcacttattttttttttattttttattgggatttccaattcattgtttcttccaacagttacattttgcaaactaatatttcttaacaatgggtacgttttattgtag
species | Vitis vinifera |
transcript | Vv09s0002g02240.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGCTCTTAAG GCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTGEST: gi|33408367|gb|CF213994.1|CF213994
genomic: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGGTCTTAAGgtgtcactta ... tttattgtagGCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTG
EST: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGCTCTTAAG GCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTGEST: gi|110420866|gb|EC987151.1|EC987151
genomic: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGGTCTTAAGgtgtcactta ... tttattgtagGCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTG
EST: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGCTCTTAAG GCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTG
genomic: CAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGGTCTTAAGgtgtcactta ... tttattgtagGCACCAACATTCACAATAGTTTCAAATGCTGGTGGTGATGGTGCTCTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTTGCTCTATTGTATGCCACAAAAGTTCTGGAAAACATTCAGACTTCAAATGAAGACCAAAAAAGAGGAGTCCAGATAATCCAGAATGGTCTTAAGgtgtcacttattttttttttattttttattgggatttccaattcattgtttcttccaacagttacattttgcaaactaatatttcttaacaatgggtacgttttattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG