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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaattgtcatatctaataattttatattggattagttgttcaaaacttaatatatgttgctgtggataatcgtactttccattgagatgcatgg...

Basic information

species Vitis vinifera
transcript Vv09s0002g01560.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46910096|gb|CN545471.1|CN545471
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|110688772|gb|EE067708.1|EE067708
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|29785322|gb|CB342196.2|CB342196
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAG-GATCNTTTAGTTGGTTGATTGATCATATTC
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATT-TTTAGTTGGTTGATTGATCATATTC
EST: gi|71889230|gb|DT038285.1|DT038285
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|71882373|gb|DT031428.1|DT031428
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|33402674|gb|CF208301.1|CF208301
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|30253108|gb|CB970659.1|CB970659
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|71887408|gb|DT036463.1|DT036463
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
EST: gi|161707060|gb|FC055937.1|FC055937
EST:     TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT                         GAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT
genomic: TGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCTgtaagaaaat ... ttcttgacagGAAATGCCATACAAAGGAAGAGATTTTTAGTTGGTTGATTGATCATATTCT