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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAGgtgtgaagaaaatgtacctagtgtagctgtgtgtacttagtgcaccgcagatactaatatgctgtttccttatttcattgttgagatgtgagatatactttgtttgaaatctatgtttctctgcattttcttttgctgcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00480.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G51830.1 (Arabidopsis thaliana), 5'ss of exon 14
ATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAGgtgtgaagaaaatgtacctagtgtagctgtgtgtacttagtgcaccgcagat--actaatatgctgtttccttatttcattgttgagatgtgagatatactttgtttgaaatctatgtttctctgcattttcttttgctgcag
||| ||| | ||||||||||| |   | ||  | || |||||||||||| |||| ||||||||||||||||| |||||||| || || || || |||||||| ||  |||    | | || | |   |   | |  ||  |     |||  |  | |  || | | | | || ||   | |  || |   | || |                                               
ATATTTCCTTGTAGACGCAGACGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGACCGCACAAATGTTACCCAGgtttgttgaattatttcttactctctttcattttcatttctagtaggcatcttgattggtacggtatgttct-atacaactcatgggtgattaggtgggac------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28965557|gb|CB344590.1|CB344590
EST:     CTGCATTGATTGTCTTGATCGAACGAACGTAACCNAG                         AATTACTTTGCTCAGAAATCTTTAAACGCANAACTGCAAAGGGTTGGAGTA
genomic: CTGCATCGATTGTCTTGATCGAACGAACGTAACCCAGgtgtgaagaa ... tttgctgcagAATTACTTTGCTCAGAAATCTTTAAACGCACAACTGCAAAGGATTGGAGTA