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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCATGTTGCTAAGGACATTGTTCCAAAGgtaacctccatttgttgaacaagctctccatttattttattgttttcttttccatgtctcatggtattctatttcctattcag

Basic information

species Vitis vinifera
transcript Vv07s0005g05030.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G19230.1 (Glycine max), 5'ss of exon 17
AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCATGTTGCTAAGGACATTGTTCCAAAGgtaacctccatt-tgttgaacaagctctccatttattttattgttttcttttc-catgtctcatggtattctatttcctattcag
||||   | |||||| ||||||||||||| ||| |||||||  ||||| ||||| | ||||| |||||||| ||||||| |  | || |  ||  |  | | | | ||||| |  ||| |||||| || || ||       | ||| |  || | |||||
AAAGATGCTATGGAAAATTCAGTTGAGATTGTAGTTGAAAAGCTGCTTAATGTTACCAAGGATATTGTTCCCAAGgtaagcagctttatcatgttcttgattttcttttatgtagttgctttcttctctcaggttctgcaattttc-acctcttcttcag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G04850.1 (Glycine max), 5'ss of exon 17
AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCATGTTGCTAAGGACATTGTTCCAAAGgtaacctccatt-tgttgaacaagctctccattt-attttattgttttcttttcc-atgtctcatggtattctatttcctattcag
||||   |||||||| ||||||||||||| ||  |||||||  ||||| ||||| | ||||| |||||||| ||||||||   | || |  ||  |  | | | | ||| || |  ||| |||||||||| | |  |     | ||| |   | | |||||
AAAGATGCCATGGAAAATTCAGTTGAGATTGTTGTTGAAAAGCTGCTTAATGTTACAAAGGATATTGTTCCCAAGgtaacaaactttatcctgttcttgtttttctttttatatagttgctttcttttcccaggcattgcaattttc-acccctttttcag