Sequence
atgc intronic sequence ATGC exonic sequenceAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctcttacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaatgatggtggtgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctct--tacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaa-tgatggtggtgc
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AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgttagttttcagaagtcacaattagcctgttta-accagatttttcaccaaa--caaagataaatgcatttgtgctctccagagtaataggttctgaaaattt
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 3
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctcttacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaatgatggtggtgc----------------------------------------------------------------
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AATTTGTTGAGCAAGGAAGGGTTCTGCACAACTATGCTTCAATTTTGGAGTTACTTTTGCGCCTAAGGCAATGCTGTGATCATCCATTCCTTATTATGAGgtttgttgccatgcaatgctatccataacagtagcctgttatggtacttgaaatttggatttgtatcttacatgaatagcaatatcttttaaaactgaacatcgatatttatggtcttttgttgtcaattacctattgatgatggagttttttttggttgccag
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttg-tctcttacttgggtttgctccattagtga--tggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaatgatggtggtgc
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AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgtaccaaaattctactgccagcacctgagc-acaaattattctaattgtaagctt--
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttg-tctcttacttgggtttgctccattagtga--tggattcatgccctagtgcagtggtgctggtg-atgatg-ctgttgataataacaatgatggtggtgc
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AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatgacaacttattgtaattgtaagcatctt-----
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctcttacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtga-tgatgctgttgataataacaatgatggtggtgc---
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AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggcttttactggctttttatttagtatagataca--cattgctgggtttaacttccatggctacttaatctgttgc--atgacgttgtataaaatatccaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30253382|gb|CB970933.1|CB970933EST: TTGCTTTTACGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAG TCGAGGTGATACACAGGAATTCTCTGATCTGAATAAGCTAGCTAAGCATTT
genomic: TTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctct ... atgtgtccagTCGAGGTGATACACAGGAATTCTCTGATCTGAATAAGCTAGCTAAGCATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctcttacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaatgatggtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca