1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AAGGAAAATTCCTCTGGTGAGTGATCTTCCAACAATAATCTTTGGTGCTGATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttcccagttaaatgatattttcacttctttgactccttttatgtggtgttgtgctaaatggttgaataaactgacgcag
species | Vitis vinifera |
transcript | Vv06s0061g01040.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGEST: gi|351012088|gb|FQ429894.1|FQ429894
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGACTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGEST: gi|351016543|gb|FQ423970.1|FQ423970
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGEST: gi|33404266|gb|CF209893.1|CF209893
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAGTACAGGGGGCTGGTGEST: gi|351021994|gb|FQ437781.1|FQ437781
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAGTACAGGGGGCTGGTGEST: gi|351030739|gb|FQ438577.1|FQ438577
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGEST: gi|349814521|gb|FQ399161.1|FQ399161
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGEST: gi|351049114|gb|FQ431658.1|FQ431658
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
EST: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCG GTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
genomic: ATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttccc ... actgacgcagGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAAAATTCCTCTGGTGAGTGATCTTCCAACAATAATCTTTGGTGCTGATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGgtatgttcccagttaaatgatattttcacttctttgactccttttatgtggtgttgtgctaaatggttgaataaactgacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC