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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03450.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G04970.1 (Glycine max), 5'ss of exon 14
TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag
 |||||||| || || |||||||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| ||||| || ||||||||| |    |||||||    |||| |||  | ||     | || |   |  |||||||     |||| ||  |  |||| | |||      |||||
CTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACAGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCTCTTCAAgtatgaatctggttcttttattcattgttgcttaatactacaaattcagtttcctgttttt-----tcttcattctgaattacttcttttgatgtgcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G40430.1 (Glycine max), 5'ss of exon 14
TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag
 |||||||| || || |||||||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| ||||| || ||||||||| |    |||||||    |||| |||  | ||   | |  ||||  ||    ||||    ||| | ||     |||| |||||      |||||
CTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACAGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCTCTTCAAgtatgaatctggttcttttatacattgttgcttaatac-tacaaattatgtttcctgtttt----ttcatcattccgaattactgcttttgatgtgcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 14
TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag
 ||||| || || || |||||||| ||||| |||||||| || |||||   ||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||  || |  ||||  | || ||   |  ||   || |||  ||| |   ||  || | | | ||||  |  |||| || |       |||||
CTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTGTTCTGGGGCCAAAGACCACTTCAAgtatgatt--cacttctttgcttctttatt--gcttaataattcttgttccat---ttcatattttacattattctgaattactgttcatgatatgcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA12G07740.1 (Glycine max), 5'ss of exon 14
TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag
 ||||| || || || |||||||| ||||| |||||||| || |||||   ||||||||||||||||||||| || || |||||||| |||||||| |||||||||||  || |  ||||  | || ||   |  ||   ||  ||  ||| |   ||  || | | | | ||     |||| || ||      |||||
CTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTATTCTGGGGCCAAAGACCACTTCAAgtatgatt--cacttctttgcttctttatt--gcttaataattgttgttccat---ttcctattttacatcattccaaattactgtttatgatatgcag