Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaataatatgcaaattttcttttctggccagtttccattgttttcttcctcccttcctgttcctttcttccttttgttggtttcactaattgattttttattttttttcctttag

Basic information

species Vitis vinifera
transcript Vv06s0004g00950.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351016532|gb|FQ423959.1|FQ423959
EST:     CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|27580831|gb|CB003526.1|CB003526
EST:     GCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: GCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|349815944|gb|FQ403561.1|FQ403561
EST:     CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|349812094|gb|FQ410891.1|FQ410891
EST:     CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|349812081|gb|FQ410878.1|FQ410878
EST:     CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|32249956|gb|CD715775.1|CD715775
EST:     GCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: GCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|27579894|gb|CB002589.1|CB002589
EST:     GCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: GCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|27581325|gb|CB004020.1|CB004020
EST:     GCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
genomic: GCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG
EST: gi|349808021|gb|FQ402412.1|FQ402412
EST:     CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAG                         ACTATTGGTCAAGCATATGAAGATGTGCAGACACAAAACCAACATCTGCTG
genomic: CCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaat ... tttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGgtctcctaataatatgcaaattttcttttctggccagtttccattgttttcttcctcccttcctgttcctttcttccttttgttggtttcactaattgattttttattttttttcctttag

- - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC