1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttccaacaaactctatgtttgtatatttccaattaccaaaactagatatacaattgctcttttgtgatttgaatatatgcataatgatttaga...
species | Vitis vinifera |
transcript | Vv05s0077g02310.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|83275899|gb|DV939907.1|DV939907
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: ACATAAAGAAATTTAA-CTTCCGAAAGGAGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|254917683|gb|GR903335.1|GR903335
genomic: ACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|349818063|gb|FQ408838.1|FQ408838
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|351038798|gb|FQ464664.1|FQ464664
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|110384526|gb|EC948969.1|EC948969
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGAGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|110724126|gb|EE099691.1|EE099691
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|110418369|gb|EC984516.1|EC984516
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGAGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|110418288|gb|EC984425.1|EC984425
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGAGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|77581807|gb|DV219858.1|DV219858
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGTEST: gi|110699826|gb|EE077177.1|EE077177
genomic: AACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
EST: AATTTTTGCACAACATGCT GTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
genomic: AATTTTTGCACAACATGCTgtgagttttc ... ttttgagcagGTCCCAGCAGAAAACCATCATAAATGCTATGGCTGTCAATGAAGAAGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCGAAAGGGGAATTTTTGCACAACATGCTgtgagttttccaacaaactctatgtttgtatatttccaattaccaaaactagatatacaattgctcttttgtgatttgaatatatgcataatgatttaga
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaaa