1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GACATAAAATTTGCTGTTCATGCGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttacaatatttactgctaacagccgattgagtgtggctgcagtaatctccttgtttctccatgctaaatgtaaaagcaatgagaagccagactt...
species | Vitis vinifera |
transcript | Vv05s0077g01210.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|110398357|gb|EC964660.1|EC964660
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|34544811|gb|CF513043.1|CF513043
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|22010656|gb|BQ795675.1|BQ795675
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|110392789|gb|EC957206.1|EC957206
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|110381634|gb|EC934980.1|EC934980
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|110423945|gb|EC990298.1|EC990298
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|110381614|gb|EC934930.1|EC934930
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCTEST: gi|34549728|gb|CF517960.1|CF517960
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
EST: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAG GTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
genomic: CGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttac ... tctggtgcagGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATAAAATTTGCTGTTCATGCGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGgtaaacttacaatatttactgctaacagccgattgagtgtggctgcagtaatctccttgtttctccatgctaaatgtaaaagcaatgagaagccagactt
- - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgagaa