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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaaaaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 14
ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaa---aaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag
|||   | ||||  |||  || || |||  | |  |  |  | || |||| ||| ||| |  |||||||||||||||| ||| | |||||| ||||||||||||         || |||  ||  | |||||| |    | |    | | | || ||   |     | |   ||  || |||||| |     
ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCAgtaagtag--------atcttccctgtgactttgaagagtttagaccttacaggcaacctgcttatgttata---acttat-tcctacag-----

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 14
ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaaaaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag
 || ||  | |||||||  || || ||| |||||||||| ||||| |||   |  ||| | ||||| |||||||| ||||||||||||||| ||||||||||| | |        ||   |||| |||||  |     |   |    ||  |  |  ||   |  |                       
GTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacatgttggattgagattttttaggttgattgattctgattttaacattcttcgcag----------------------

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G04070.1 (Glycine max), 5'ss of exon 14
ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaaaaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag
 || ||  | ||||| |  || || ||| |||||||||| ||||| |||   || ||| | ||||| |||||||| ||||||||||||||| ||||||||||| | |      | ||   ||||| ||||  |     |   |        |||   || | ||  |    ||                
GTCAGGTATTCCAGACGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacaagttggattgaatttttttatgttgattgat-------tctgattttaacattcttggcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390987|gb|EC955937.1|EC955937
EST:     CAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCA                         ATATCTTACAGACTCTTTGAGCTGACAAATACTTTGAAAGTTGCATTCGTG
genomic: CAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaaca ... tactgtgcagATATCTTACAGACTCTTTGAGCTGACAAATACTTTGAAAGTTGCATTCGTG
EST: gi|351025158|gb|FQ433575.1|FQ433575
EST:     CAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCA                         ATATCTTACAGACTCTTTGAGCTGACAAATACTTTGAAAGTTGCATTCGTG
genomic: CAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaaca ... tactgtgcagATATCTTACAGACTCTTTGAGCTGACAAATACTTTGAAAGTTGCATTCGTG