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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatttcacttccagagattgagcctgcctgaattctattctgcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01650.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 15
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatttcact-----tccagagattgagcctgcctgaattctattctgcag
     |    |||||||| |||||||||||||||||||||||||||||||| || |||||  ||||||||||||| ||||| ||    |||||| |  ||||||      | |  ||| |   |   | ||   | ||  |     || | |  |  |     | ||   | | | ||||||
----GTGATGACACAGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTATTTTGgtaagcattctcatctgaatctttcagtgagttgtctctttgggactctacacttcaatataccatggtatttttactgcag

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G33310.1 (Glycine max), 5'ss of exon 14
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaa-cacaattgacatgatttcatttataagcaatttcacttccagagattgagcctgcctgaattctattctgcag
     |    |||||||| |||||||||||||| |||||||||||||| || || |||||  ||||||||||||| ||||| ||    | |||| |  |||||| ||       ||  || | |                                                      
----GTGATGACACAGGCAGATTTAGGCCTTGCGGATGCATATATCAACGGGGACTTTTCATTTgttgataaagatgaaggtctcttgattcttattttggtaagcattcccatcagaatcttacag---------------------------------------------------

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G23530.1 (Arabidopsis thaliana), 5'ss of exon 12
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatttcacttccagagatt--gagcctgcctgaattcta-----ttctgcag
     ||   ||||| || |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||   ||| |||  ||||||  | |||||| || |||  | |    |  |   |||   | ||    ||   |   ||  |||  ||  | | |  |      ||||||||
----GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTTGATAAAGAATCAGGACTTTTAAATCTGATTATGgta-cataatatatacatgtagaagcatagatacttgagtttttcgtcttttcgagtttgtttaattaatgaaactttctgcag

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G23510.1 (Arabidopsis thaliana), 5'ss of exon 12
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatttcacttccagagatt--gagcctgcctgaattctattctgcag----------------------
     ||   ||||| || |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||   ||| |||  ||||||  | |||||| || |||  | |    |  |   |||   | ||    ||   |   ||  |||        ||   |  |||||                        
----GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTTGATAAAGAATCAGGACTTTTAAATCTGATTATGgta-cataatatatacatgtagaagcatagatacttgagtttttcgtcttttcgagttatttctaaagtttctctgcttaattaataagtcttttatgcag

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G23480.2 (Arabidopsis thaliana), 5'ss of exon 4
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatt-tcacttccagagattgagcc-tgcctga--attctattctgcag
     ||   ||||  || |||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||  ||| |||   |||||  | |||||| || |||  | |    |  |   ||| | | ||    |||| |  | | |||   |  || |   || |  ||| |||
----GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgta-cataatatatacttgtagaagcataggtacttacttcttcgattgttcgagttatttctaatggtttttatctacag

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G23460.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgtaacacaattgacatgatttcatttataagcaatttcacttccagagattgagcc--tgcctga--attctattctgcag
     ||   ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||  ||||  |||| ||   ||| |||   |||||  ||||||||     |   |||    || |   ||  | |  |    ||  | |  ||    |      |||  ||   |   |||||
----GTTATGACACAGGTTGATTTAGGACTTGCTGATGCTTATATCAATGGAGATTTTTCATTTGTCAATAAGGAAACAGGACTTTTGAATCTGATCATGgtattgttacatacacatattaaagcatgtggatctatgtttaaaaacttttgatcgacatttgatcatgaaaacttgcag

upper sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G23470.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAGATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAATCTTTTCATGgta-acacaattgacatgattt---catttataagcaatttca-cttccagagattgagcctgcctgaattctattctgcag
     ||   ||||| || |||||||| || |||||||| ||||||| ||||||||||||| | || |||||||||  ||| |||   ||| |  | |||||| |    |   ||   | ||   ||| |||    | || |  |||| |  | | |||        |||  || | |||||
----GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag