Sequence
atgc intronic sequence ATGC exonic sequenceGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcactactttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 17
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcacta--ctttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa-------
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AGATTTACTGGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcat------gttatacactttcataacaaaatttttagtg--ggttga-actgtacctccgttgaattggtt
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 17
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcacta--ctttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa----
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AGATTTACTGGTTTCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGgtcattatgtttaatttatgatgaaagatctataatgcatgttataa--actttcataacaaacagcaccattgaaa-agtctgaaatt---tgtttggtaagctt
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 16
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcactac-tttgtccatgatgctta-tcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa--
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AGACTTGTTGATTTCCTTTAGAAAGGCAACAGGGCAGAAGCCTCTAAGAATTATCTTTTATAGgtatgtatgtttaattatgatgcaaggtcatggcatgttgtgacttg---cataacaaaaatatgtggtttgaacttccg-ttgattttgagtggctagtggca
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 8
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcactac-tttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa---
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AGATTTGTTGATTTCCTTTAGAAAGGCAACCGGTCAGAAGCCTCTAAGGATTATATTTTATAGgtatgtatgtgtaattatgatgc--aaggtcaaagcatgttgtaacttgcataacaaaaatatgtggtttgaacttctgttttgagtgg--ccagtggcaacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188618|gb|CF607967.1|CF607967EST: TCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG GGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGA
genomic: TCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcactactt ... atttgagcagGGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGgtcactactttgtccatgatgcttatcattgaatagatcctcttgttgcatgtgtactttgtgacattcttgctgcagcttgacatggtgcctttgataa
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga