1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CATTACAAATGCTGTAAAGACATCTGGTGTTTTAAGGGAGAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTGgtaaaatatactatcaattagatttttgtcacatttttgcacgtggtcgccttttgggtctcgcttgctagactgtcatacttaaaacatggatattctc...
species | Vitis vinifera |
transcript | Vv05s0020g03080.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTG GTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAGEST: gi|161720400|gb|FC069849.1|FC069849
genomic: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTGgtaaaatata ... attgtttcagGTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAG
EST: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTG GTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAGEST: gi|37185045|gb|CF604398.1|CF604398
genomic: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTGgtaaaatata ... attgtttcagGTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAG
EST: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTG GTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAG
genomic: GAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTGgtaaaatata ... attgtttcagGTAAGAATCCATCTCCCATGTGGGACAGATTGGTATTTAATAAAATAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTACAAATGCTGTAAAGACATCTGGTGTTTTAAGGGAGAGGCTGTTCAATGCTGCATACAATGCTAAGAAGAGAGCAATATTGAGTGgtaaaatatactatcaattagatttttgtcacatttttgcacgtggtcgccttttgggtctcgcttgctagactgtcatacttaaaacatggatattctc
- - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaca