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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGGGAGAATGACTTCACATTTCCATGTGGGCCATTAGTTGGAGATGATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGgtatggttttctttcatataaatcttccttgcattacatgatgatattatcatattattggttcttaatctttatgggtcatatcttgcatcggagatcttgtaaggtagaaatcttgcaattttcacttgctctgtaaattactgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g02910.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G39670.1 (Glycine max), 5'ss of exon 14
TGAGAGGGAGAATGA-CTTCACATTTCCATGTGGGCCATTAGTTGGAGATGATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGgtatggttttctt------tcatataaatcttccttgcattacatgatgatattatcat-attattggttcttaatctttatgggtcatatc--ttgcatcggagatcttgtaaggtagaaatcttgcaattttcacttgctctg-taaattactgcag
 || | | |||   | |||  ||||| || ||| |||  |||     || ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||    ||||  |       ||||||  | ||   | || || |  || ||   || ||  |||    || || || ||| |    | | |   ||  |||    ||| |  ||  || |||  ||    ||||   ||  | |  | ||||||  |||
-GAAAAGAAGACCAAACTTGCCATTTTCAAGTGAGCCTCTAGGAACTGAAGATGATGATGAAGTTACTGAGTCTAAAATTAGAGCCTTCCTGGATGATAAGgttctattttaatatgagaccatatatctgttgacttcaatatagcattattcaatgattgttaccttttttttatttttgtttacctttttgtttaaatctagcatcgttaaaactaaaaacattt---ttttattttattttaatgaattacatcag

upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G28090.1 (Glycine max), 5'ss of exon 14
TGAGAGGGAGAATGA-CTTCACATTTCCATGTGGGCCATTAGTTGGAGATGATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGgt-atggttttctttcatataa-atcttccttgcattacatgatgatattatcatattattggttcttaatctttatgggtcatatcttgcatcggagatcttgtaaggtagaaatcttgcaattttcacttgctctgtaaattactgcag
 || |   |||   | |||  ||||| || ||| | |  |||     || ||||||||||||||||| ||||| |||||||||| ||| || ||||  ||||| ||  |||  | | | |  | || |   |||  || ||  ||   |||||   ||   || | | |  |  || | | | |  | ||   |   | |||| | |  ||  |||| | | ||    || ||  |   | ||||||   ||
-GAAAAACAGACCAAACTTGCCATTTTCAAGTGAGGCTCTAGGAACTGAAGATGATGATGAAGTTACTGAGTCTAAAATTAGAGACTTCCTGGATGCTAAGgttatattttaatatgagaccatatgtctgttgactttcaatatagcattattcaatggctgttacctttttatttttgtttacctttttgttt--aaatctagcaccgttaaaat-tagaaa----catttttttaatgaattacgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251582|gb|CB969315.1|CB969315
EST:     ATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAG                         GCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAAC
genomic: ATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGgtatggtttt ... attactgcagGCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAAC
EST: gi|30251330|gb|CB969063.1|CB969063
EST:     ATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAG                         GCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAAC
genomic: ATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGgtatggtttt ... attactgcagGCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAAC