Sequence
atgc intronic sequence ATGC exonic sequenceATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: 13113.m00246 (Oryza sativa), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattat-ttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| ||| | ||||| ||||||||||| || ||||||||||||||||||| || ||||| || || ||||| ||||| || ||||||||||||||||| ||||||| || | ||| | |||| || || | | ||| | | | | || | ||
ATTGACCGTATCATAGCTAAAGGAGAGGAAACAACAGCTGAGCTTGATGCAAAAATGAAAAAGTTCACAGAGGATGCTATTAAATTTAAAATGGATGACAgtatgta---cccttctcccgcagtctctttctttctatcactcaggtctaacttagtctttttatgcag----------------------------------
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatc-cactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| ||| | ||||| ||||| |||||||| |||||||| | |||||||| || |||||||| || ||||||||||| || || || ||||||||||| |||||| || | || || ||||| |||| ||| | || | |||| | || | || | | || | | || | || ||
ATTGACCGCATCATCGCTAAGGGAGAAGAAGCAACAGCACAACTTGATGCAAAAATGAAGAAGTTCACAGAAGATGCTATTAAGTTCAAAATGGATGACAgtatgaccctctctctctctctctctctctctcaatatct-ctcacacacttccttctctatgtctgcatatattcagtacaa-actcataaagtttggtct--
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| ||| | || || ||||||||||| ||| |||||||||| |||||||| || ||||| || || ||||| || ||||| |||||||| |||||||||||||||| | | || | | ||| | || | || ||| || | ||||| || | |||| || | | | | |||
ATTGACCGTATTATAGCTAAAGGAGAGGAGACAACAGCTGAACTTGATGCAAAAATGAAAAAGTTCACAGAGGACGCCATTAAATTTAAGATGGATGATAgtatgt--acctgctccct---gttcttatgtcttctgacgttctctgctcctatgtcttatgttttcc-----tacctaaacactt-tattttctgatgcag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 11
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgtt-cag
|| ||| | || || ||||||||||| ||| ||||||| || |||||||| || ||||| || || || || ||||||||||||||||| |||||||||||||||| | | | || || | || | | ||| | ||| || || || || || || ||||| | | | | || | |||
ATTGACCGTATTATAGCTAAAGGAGAGGAGACAACAGCAGAACTTGATGCGAAAATGAAAAAGTTCACTGAGGATGCCATCAAATTTAAGATGGATGATAgtatgt--acctgttttctgtttctatttcttgtgacttattc-tctctttctgtgtcttctg---tcaatctac---ctaacaccttttattttctgatgcag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag-----
|| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||| || | ||| || || || | | ||||| | | | | |||| || ||| |||| | || | | |
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaa-ttctggct------ttgctaaatttggtttgattgatgtcgt-tagaaatctattttgttgtttaaattcctgtatacccataag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttactta---tctac---ttttgaaagttatggggc---taaaatataatt--taacatttat-cctgctttgttcag
|| || || || |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| | | || | | | | || |||| | | | ||| |||| || | | || |||| || ||| | | | | | |||| | ||
ATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTAGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACAgtatgtg--cctataattctagctttaaaaacaatattggcatgatctttacaagttttatgctttcttctgtctgtagtttatagttactaatactggtgctttctttttgtag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| ||||| || |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||| || | ||| || | | | || | |||| ||| | | ||||| |||| | | | ||
ATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttgaatataat-ttctggctttgctaaagttggtttgattgatgatgttaaaaatctattttgttgtttaa-atttctg-tatatccacaag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtg-----gatccactatccagggctctcactcattatttac---ttatctac---ttttgaaagttatggggct---aaaatataatt--taacatttatcctgctttgttcag
|| || || || |||||||||||||| |||||||| || ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| ||||||| || || | | | | | || |||| | | | ||| |||| || | | | | || | || ||| | | || || || | ||
ATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCCGAGCTTGATGCCAAAATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACAgtatgtacctatgactacctgttctagctttaaaaacaatattggcatgctctttacaagttttatgctttcttctgtttgtagtttagagttactaatactgatactttcttttgtag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | |||||||||||||| |||| | | || || | | | | || | || | || | | || ||| || ||| | | ||| |||| | |
------AGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCTAAGATGAAGAAATTCACAGAAGATGCTATACAGTTTAAAATGGATGACAGTAAGGgtgtcacttacctactatttcccctattaggttgtgtgaatattgt--aatgttttga---taatctgttgttt--tatttgttgtag---------
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| || || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | |||||||||||||| |||| | | || || | | | | || | || | || | | || ||| || ||| | | ||| |||| | |
ATTGATAGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCTAAGATGAAGAAATTCACAGAAGATGCTATACAGTTTAAAATGGATGACAgtaagggtgtcacttacctactatttcccctattaggttgtgtgaatattgt--aatgttttga---taatctgttgttt--tatttgttgtag---------
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| ||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| || | |||||||||||||| |||| ||| ||||| | || | | ||| | | | || ||||| | | || || ||| || |
ATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAgtaagtgtgctatttatcc-----ctttttccaatggtaactcccttgcat----gggtaatgggatgtccaaacaagatagtttttggtttgttgcag----
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ06565 (Selaginella moellendorffii), 5'ss of exon 14
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
|| || | |||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||| || || |||||||||||||| ||||| || |||| || || || || | | | | | |||||||| || | | |
ATTGATCGCATCATTGCAAAAGGAGAAGAAGCCACTGCTGAACTTGATGCCAAGATGAAGAAATTTACGGAGGACGCCATCAAATTTAAGATGGACGACAgtaagt----------tctagtgcgtt--tttgtgttctccttatctagcgtttcgtttaacag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28967912|gb|CB346945.1|CB346945EST: TAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATA CTGCTGAGTTGTATGATTTTGATGATGAAAAG
genomic: TAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggat ... ctttgttcagCTGCTGAGTTGTATGATTTTGATGATGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG