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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcccaaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01040.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os06g08400.2 (Oryza sativa), 5'ss of exon 10
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcccaaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag-----
  |   | ||  ||    ||||  | ||||| || || || | |||| |    ||||||||||||||||| |||||||| ||| | ||||| ||||| ||||     |  |  |||    |  ||      ||  |||| |  |||  || | ||    |||       ||| |  |      | | ||  || |      
GAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGgtgaaccacttactatctgtttcataatgccattgttaccttgttg-ctactcttttaatatcaacaaaaactaggaggaatattcgaatttataactgat

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G017845_T01 (Zea mays), 5'ss of exon 10
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc--tcttatgctctctatcccaaaatgtttacttgcttgattagttttgatg-tatgtgtcgcaaccaaaaaatccctcctaaaatacag---
  |   | ||  |    |||||    ||||| ||||| || | ||||||    || |||||||||||||| |||||||||||| ||||||| ||||| ||||   || ||   ||| || | | |||      ||  | | |  ||    |      ||   | ||   | | | |   ||   |  | |  | |   |   
GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctc--ctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 6
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctct-ctatcccaaaatgtt-tacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag
||    ||||||| ||    ||  ||||||| || ||||||| ||||||  ||||| | |||||||||||||| |||||| |||||||||| || || ||||||  | |||  ||   ||| || ||  ||  |    | ||||| | || |  ||     ||| |    |||        |   |       || ||
TTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatcct-tcttgtacaatctactttcataatctacagtgcttgcat-atgacattcctcatatataattcaatt------tttttttatgtttatag

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 10
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcc-caaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag
|  |  |||| || | | | ||  | ||||| || || |||| |||||| |||||||| |||||||||||||| || ||| |||||||||| || || ||||||  |   ||| || |  |||||   || ||| | || | | |||  ||  |   ||  |   |    ||   || | |   |  | | |     
TAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatcct---tctgataccatctattttcataatctatagt-gtttgcata--tggaattcaatggatataattcaagattttatattcatag----

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 9
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcccaaaatgtttacttgcttgat-tagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag
|  |  |||| || | | | ||  | ||||| || || |||| |||||| |||||||| |||||||||||||| || ||| |||||||||| || || ||||||  | |||  |||  ||| | |  |||||| | || ||  |  || | |  || |      | |      |||  | |   |  | | |     
TAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatcct-tctgatatcgtctat-tttcaaaatctatagtttttgcatatggaattcactctaatataat--tcaaggattttatattgatag----

upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctcta-tcccaaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag
|| |  ||||||| ||    ||  ||||||| || ||||||| |||| |  ||||||  |||||||||||||| |||||| |||||||||| || || ||||||  |   |||||| |  |||| |  || ||| |  | | |||||  ||    |||  |         |      || | | |      ||| ||
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatcct---tcttatacaatctactttcataatctacagt-gcttgcata----tgacattccccatatataattcaatttcttttatgtatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110368327|gb|EC932299.1|EC932299
EST:     GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAG                         ATTGCTGACCGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAA
genomic: GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc ... taaaatacagATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAA
EST: gi|110715090|gb|EE092739.1|EE092739
EST:     GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAG                         ATTGCTGACCGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAA
genomic: GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc ... taaaatacagATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAA
EST: gi|110397911|gb|EC963898.1|EC963898
EST:     GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAG                         ATTGCTGACCGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAA
genomic: GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc ... taaaatacagATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAA
EST: gi|30137737|gb|CB923075.1|CB923075
EST:     GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAG                         ATTGCTGACCGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAA
genomic: GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc ... taaaatacagATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAA
EST: gi|110731744|gb|EE106423.1|EE106423
EST:     GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAG                         ATTGCTGACCGGGACGATCCTGGCTCATGAGATGATGCATGCATGGCTCAA
genomic: GTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc ... taaaatacagATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAA