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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGgtgagccatacataaaattcttgtttaactttcagcccgcctcttcttttcttatatttagtttctattctgaatgcgctccttaactggaattctccag

Basic information

species Vitis vinifera
transcript Vv04s0008g06810.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G174785_T02 (Zea mays), 5'ss of exon 15
ATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGgtgagccatacataaaattcttgtttaactttcagcccgcctcttcttttcttatatttagtttctattctgaatgcgctccttaactggaattctccag
|| ||| || || ||||||||  | || || ||  | |||||||||||||||||||||||||| ||| | || ||||||||||||||||| || || |||||||  | ||  |   ||  || ||||| |    |   || | || || || |  || |  || |   |||| |||   |  ||  |||   |||| |||
ATTCCGAACGAAGTTTGAAGCTTCTTTGCCAGATGTTATGGAGAGCTTTAATGACTTGTATCGCAGTATCACTGGAAGGATTACTGCTGAAGCTCTGAAGgtga--cttatgttgcatcattttttaaatactgga--gcttatttttatccttgatgttcttacatgtctgcatggatttattt-ctg---ttcttcag

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 11
ATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGgtgagccataca-taaaattcttgtttaactttcagcccgcctcttcttttcttatatttagtttctattctgaatgcgctccttaactggaattctccag
||| || ||||| ||||||||||| || || ||||||||||| || ||||||||||||||||||||  ||| |||| ||||||||||||||||||| |||||  ||   ||| | | |   ||  || |  |  |            | || || | ||| ||      ||||||     |||                  
ATATCGCACCAAGTTTGAAGCAACATTGCCAGACATAATGGAAAGTTTTAATGACTTGTATCGTAGCATAATGGGACGGATTACTGCTGAGGCCCTAAAGgtaggctgaacaatcatagatttccttgatat--aatttcttataattcttattctgtttggtgatctgtctgaaaatattccag----------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 15
ATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGgtgagccataca-taaaattcttgtttaactttcagcccgcctcttcttttcttatatttagtttctattctgaatg-cgctccttaactggaattctccag
||| || ||||| ||||||||||| || || |||||||||||||| ||||||||||||||||||||  | | |||| | || |||||||| ||||| |||||  ||   ||| | | |  ||| ||| |  |                ||||||||     |||  |||||||  ||  | || ||  ||| |||  |||||
ATATCGCACCAAGTTTGAAGCAACATTGCCAGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATTATGGGACGTATCACTGCTGAAGCCCTAAAGgtaggctgaacaatcatagacttctttgatataa--------------tttcttatt----gttcttattctgtttggtgatctttgtctgaaatgttccag

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G25060.1 (Arabidopsis thaliana), 5'ss of exon 14
ATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGgtga-gccatacataaaattcttgtttaactttcagcccgcctcttcttttcttatatttagtttctattctgaatgcgctccttaactggaattctccag
|||||| |||||||| ||||||||  ||||||| |||||||| ||||| |||||  |||| || ||  |||| ||||| |||||||||||||| || || ||   | || | | |||| |  |  || |          |  | |  ||  ||||||  ||  | || |||| ||  | ||   | |||    || | |||
ATACCGAACCAAATTCGAAGCAACTCTACCTGATATAATGGAAAGCTTCAATGATCTGTACCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAgtactgtcagaaagaaaaatgatcgttgat---------ggttttcattcccttataaata--tacttttctaaa--ctctttctgact----ttttgcag