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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgttgcttaatctctattctcttagtgttagcttctgttctatgggaaatctaagcctttcaactgattttgaacag

Basic information

species Vitis vinifera
transcript Vv04s0008g02780.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 14
CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgt-tgcttaatctctattctcttagtgttagcttctgttctatgggaaatct------aagcctttcaactgattttg-aacag
 |||| |||||| |||  |  |||||| || ||  | || |||||||||||| ||||||||||||| | |||| ||||| |||||  | |||||||||| |||  |   |||  | |  | | | | |    |   || ||||  |   | |||        |||  | |  |||  | | | | |||
ATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgcactttcttttcagtgtttcaagaattttttatgtttaaatcgcaattattctgaaagtgtgtttactcttatggcatcag

upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA13G26170.1 (Glycine max), 5'ss of exon 14
CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgttgcttaatctctattctcttagtgttagcttctgttctatgggaaatctaagcctttcaactgattttgaacag-----
 || | ||| ||  |  |||||||||| ||||| ||||| ||||| |||||| |||| |||||||| ||||||||||||||||  || ||||| ||||| ||||||  || ||  || |   ||   |  || | |    || |     || | | | |||   ||||||| || |  |      
TTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGgtatgtaactgaaggtccaaattcaatgcttttgttaaacttatccaacaattgtga-cctcataactgatcttaatgaaaacag

upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA04G36700.1 (Glycine max), 5'ss of exon 15
CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgttgcttaatctctattctcttagtgttagcttctgttctatgggaaatctaagcctttcaactgattttgaacag-----
 || | ||| ||  |  |||||||||| ||||| ||||| ||||| |||||| |||| |||||||| ||||||||||||||||  || ||||| ||||| |||     || ||  || |   ||   |  || |    | || |     || | | | |||   ||||||| || |  |      
TTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGgta----actgaaggtcaaaattcgatgcttttgtaaatcttatccaacaattgtga-cctcataactgatcttaatgaaaacag

upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 14
CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgttgcttaatctctattctcttagtgttagcttctgttctatgggaaatctaagcctttcaactgattttgaacag-----
 || | ||| ||  |  |||||||||| ||||| ||||| |||||  ||||| |||| |||||||| ||||||||||||||||  || ||||| ||||| |||||   || ||  || |   ||   |  |  | ||   || | || ||| | | |  ||  |||||||| |  |  |      
TTTTAAGGAGATTGTATACAACTACAGAAAGCAACCACATTGCAAAACACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCCCGCCGAAATGGGgtatgcaactgaaggtcaaaattcaatgcttatgtttaacttttctgagaattgtta--ctcacaactgatctgaatgaaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710388|gb|EE086681.1|EE086681
EST:     AAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGA                         AAAACAGGGAAGGAACATGTTGATATTATCACATTTTACAATGAAATTTTT
genomic: AAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgttgct ... ttttgaacagAAAACAGGGAAGGAACATGTTGATATTATCACATTTTACAATGAAATTTTT