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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
|| ||||| || |||||||||||||||||||| || || |||||||| || || ||||| || || || |||||||||||||||||   || |    | |||| |  | |  | |||  |     ||  || || ||  |  | |  ||| |   | ||     || ||          
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcac----taataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag---------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 13
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
|| ||||| || ||||| ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||||||||||||   |  |       | || ||  | ||| |   || | | | | | ||  |      |||  |||    ||| |    | | | || | |   
CTTTATGCCAACTATGCTATTGGAAAGGATGTTCAGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcga----gtgaaata--aattcgt---aagttagttcttttt-cagacccccaa--aacttaatgttctgttccttattgcacag--

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G181151_T04 (Zea mays), 5'ss of exon 5
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctc-actcttataaattatcat---ttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag---------------------------
|| ||||| || || |||||||| ||||||||||| || ||||| || || |||||||| || ||||| || ||||||||||||||   | || | |   |||||||   |     |  |  |   ||  | |  |  ||||   |||||     | |||         |    ||   | |                            
CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagac-gtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 14
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaa-atga-atccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||   |   ||| || |         | |  | |||  |||   |   | |  |   |       ||  |  |  |   |  |||       |||||
CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctactacttttctcttgggaattcttgtttgagtatggtgtgtttgtccttgaagtggtggtactaattaattttattctttttgatcaacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 15
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgt--------acatctcactcttataaat----tatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||||        || |   |   | |||| |    |||  | |    | || ||||       |  |||      |||||  |     ||   ||     |   |||||
CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaataactttctatcttgataagtactatattttgtttcttcaagtgaaatttcccttgaagtggt--actaatggaactccccctccccttttattaacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 14
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgt-----acatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag-
 |||||||||||||||| ||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| |||||||| |||||       |  |  |||||   |||| |  ||| |    |     ||     ||| |        |||||     | |   |  ||| |     ||||| 
-TCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGGtctctactacttttctcttgggaattcttgtttgagtgtagtgagattgtccttgaagtggtggtactaattaagttt---attctttatgatcaacagc

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 14
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgt--------acatctcactcttataaat----tatcatttcatctgaaatgaa-tccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
||||| ||||||||||| || || |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||||        || |   |   | |||| |    |||  | |    | |  |||| |  |  ||| |   | |  | |   |   | | |  |||||   |   |||||
CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaataactttctatcttaataagtactatattttgtttcttaatgtgaaattgcccttgaagtgatattaatggaactcttttccccccttt--tattaacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 15
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
 | ||||| ||||| || ||||| ||||| || || || |||||||| ||||||||||||||||| |||||||| |||||||||||   |||   | |      || | |   ||    |||||  | ||  ||     |   |   |||||  || |       |    || ||||||
TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGgtctctcttcttttc-----ttcttaccacagtctaaatgctttccgtttt----attcctcttaacacttttttta----tctgatgcaaacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 13
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactc-----ttataaattat--catttcatctgaaatgaatccctattgtaagaaaacaactaacaggttg--tccgacccttcactggaaacag-----------------------
 | || ||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| |||||  | ||||| || |||||||||| | |  ||      ||     ||||   ||||||||         || || || |     |     ||      ||  || || |  ||   |  |  |                        
TTGTACGCAAATTATGCTATCGGGAAGGATGTGCAAGCCATGAAGGCTGTGGTGGGAGAGGAAGCCTTGTCTTCAGAAGATCTGgtacctgttgcttcatattttctgtttatgatatttcatcatttgatgctctctgttatcctgtagagcttagtttactgagtcagatctgtctgcgtgataatgacttcaaattgttacttgacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 13
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgta--catctcactcttataaattatcatttcat-------ctgaaatgaa-tccctattgtaagaaaacaactaacaggttgtccgacccttca-ctggaaacag--------------------------------------------
 | || ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||  | ||||| ||||||||||||  ||||||| |||  |      | |     |       ||  |||||| || | ||     ||        ||||   | ||     | | | ||     | |                                            
TTGTACGCAAACTATGCGATTGGAAAGGATGTACAAGCCATGAAGGCTGTGGTGGGAGAAGAAGCCTTGTCTTCAGAGGATCTGgtatccatctcattctatttgcccgttacgcagtggacatcctacaatgaaatctccatatgttgatggttttgaacattatctctagtacgttatctctggtctgaagcttttcactccctaatgacactctcaaccggctctatgcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 14
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatct-----cactcttataaat-----tatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag--------------------------------------
 | ||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||  | ||||| || ||||||||||          |||| | | | |      |  | |  || ||   | |||   ||||  |   |  |  || |        |  || |  |  ||  |||                                        
TTGTATGCTAATTATGCCATTGGAAAGGATGTTCAAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTGgtaccctcgtgaatactcctgtgactgcaagcagaactcaatttgt--tcaatttttatttaatccatgccgctcatttccgtgcatactccgctatgtcaactctatttgttgcttacatcctcacttgttttgttttccag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 13
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtaca-------tctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
||||||||||| ||||| ||||| || || |||||||| ||||||||||| || ||||||||||| || || ||||| ||||||||| |       | |  || ||  |    |  || | | |  || ||  | |||    |                                           
CTCTATGCAAACTATGCCATTGGCAAAGACGTTCAAGCGATGAAAGCTGTCGTGGGAGAAGAAGCGCTGTCATCTGAAGATCTGgtaaagcaccagttttgctttttgatgccagtatgttaacc-aactgtgttccttccctgcag---------------------------------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 13
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtaca-------tctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag
|| |||||||| ||||| ||||| || || |||||||| ||||||||||| || ||||||||||| || || ||||| ||||||||| |       | |  || ||  |    |  || | | |  || ||  | |||    |                                           
CTTTATGCAAACTATGCCATTGGCAAAGACGTTCAAGCGATGAAAGCTGTCGTGGGAGAAGAAGCGCTGTCATCTGAAGATCTGgtaaagcaccagttttgctttttgatgccagtatgttaacc-aactgtgttccttccctgcag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375541|gb|EC940537.1|EC940537
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110362645|gb|EC926192.1|EC926192
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110357509|gb|EC921103.1|EC921103
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110720101|gb|EE095728.1|EE095728
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAAGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110719306|gb|EE097131.1|EE097131
EST:     AGCAATGAAAGCTGTGGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGGATTCCTAGACAAATTCGAGAGAAAATTTGTGGCT
genomic: AGCAATGAAAGCTGTGG-TTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCT
EST: gi|30325437|gb|CD008699.1|CD008699
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|22013013|gb|BQ798047.1|BQ798047
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110712807|gb|EE088186.1|EE088186
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30251466|gb|CB969199.1|CB969199
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30305860|gb|CB982654.1|CB982654
EST:     AAGCAATGAAAGCTGTGGTTGAAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110690712|gb|EE068109.1|EE068109
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     AAGCAATGAAAGCTGTGGTTGGAGGATCAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCT
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCT
EST: gi|110723346|gb|EE100552.1|EE100552
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAAGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAAGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|34542515|gb|CF510747.1|CF510747
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|349813104|gb|FQ411344.1|FQ411344
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|32268554|gb|CD717713.1|CD717713
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110414446|gb|EC980278.1|EC980278
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     AGCAATGAAAGCTGTGGGTTGAAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATTTCGGGGATTTCCTAGACAATTTC-AGAGAAAAATTGGGGGCTCAGG
genomic: AGCAATGAAAGCTGTGG-TTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATT-CCTAGACAAATTCGAGAGAAAATTTGTGG-CTCAGG
EST: gi|110376681|gb|EC941748.1|EC941748
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110705729|gb|EE082911.1|EE082911
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110364580|gb|EC927938.1|EC927938
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110388684|gb|EC953461.1|EC953461
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30323729|gb|CD006991.1|CD006991
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30320892|gb|CD004154.1|CD004154
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCNGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|27583834|gb|CB006529.1|CB006529
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30251540|gb|CB969273.1|CB969273
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|110687127|gb|EE064266.1|EE064266
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30305803|gb|CB982597.1|CB982597
EST:     AAGCAATGAACGCTGTGGTTGAAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30324538|gb|CD007800.1|CD007800
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
EST: gi|30324380|gb|CD007642.1|CD007642
EST:     AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG                         CTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA
genomic: AAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctca ... ctggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag

- - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT