Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCTGTGGAGATGGCATTGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAGgtaaatgcatgcagtgctgctggccattttaattttaagtgttgtatgttctaggtctagtttgcaaatagttagatcacccatttttttcagcttttattctttattgttgtcaattag

Basic information

species Vitis vinifera
transcript Vv03s0038g00970.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 13
TACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCTGTGGAGATGGCATTGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAGgtaaatgcatgcagtgctgctggccattttaattttaagtgttgtatgttctaggtctagtttgcaaatagt-tagatcacccatttttttcagcttttattctttattgttgtcaattag
 ||||| |||||||||||||||||||||||||| ||  | ||    ||| ||||||| |  | ||| |||||  |   | |||| ||  | |||  ||||||| |   ||   |  ||     ||| ||  ||  |  || ||  |||  ||||   |   |   || |  |     ||   | ||| ||| |  |  | ||||| |||  |   |     
CACTTCCCACCCAAATTTTATTGGTGGAAGTAAGGCAATAGAAGCTGCAGTGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAGgtatacatattatggcctctaatccagttatatgctctgtttttcatg--ctagacatgaatgctaatttatgctcttctatcttttgttttaaatcctcttcttaatttataatag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689415|gb|EC938921.1|EC938921
EST:     TGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAG                         GATGGTTTAGAGCCTGACAAGGCACCAACATCTGAAAGAAGTT-GAAAG
genomic: TGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAGgtaaatgcat ... tgtcaattagGATGGTTTAGAGCCTGACAAGGCACCAACATCTGAAAGAAGTTTGAAAG
EST: gi|294966480|gb|GW839587.1|GW839587
EST:     TGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAG                         GATGGTTTAGAGCCTGACAAGGCACCAACATCTGAAAGAAGTTTGAAAGCT
genomic: TGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGTAGCCAGGCAGAAGgtaaatgcat ... tgtcaattagGATGGTTTAGAGCCTGACAAGGCACCAACATCTGAAAGAAGTTTGAAAGCT