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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag

Basic information

species Vitis vinifera
transcript Vv02s0025g01410.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os01g46750.1 (Oryza sativa), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaaca-tatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
||||| || ||  ||||||| || ||||| || |||||  |||| ||||| ||||  || ||  |||||||||||||||| |||||  ||||||||||||||||    |   |||  ||   |||  |              |  ||  | | | |     |  |  | |  |||  | |  |    |    |||   ||| |   | |                                                                                       
GGAAATGTTCGTGTTATTTTGTCCGGAGCTGCTCCACTTGCTACTCATGTTGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatctttgtttgttatctttgtagagaaag---------taggatagatgcctcacctaagaggggaggtgatctcttatatatatagctgaattacaatgaatgc---------------------------------------------------------------------------------------

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM5G861300_T01 (Zea mays), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaat-tagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
||||| ||  || |||||||||||||||| || |||||  |||||||||| ||||  ||  | || ||||| || ||||| |||||  |||||||||||||||     ||  |||  || |  |  |||    |     |  || ||| || ||| |  || | | |||    |||       | || |    |||| |  |||| |                                                                                         
GGAAATGTTAGAGTTATTTTATCTGGAGCTGCTCCACTTGCTACCCATGTTGAAGAATACTTGCGTGTGGTCACATGTGCACATGTCGTACAAGGATATGgtacatt-tcttttgcgatgtgatagctagaaattcctactcttatgattgattcatattgcaaccttgctcctgac------tcgggagtcctgagtag-atatttt----------------------------------------------------------------------------------------

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
|| |  ||||| |||||||| ||||||||||||||  | ||| | |||||||||| |||  |||| ||||| |||||||||||||| ||||||||||||||||| |  ||  || ||||   ||   | | | ||||  |  |   |   ||| |||   || |||   | |  | |  | ||    ||         |  ||||                                                                                          
GGTAGAGTACGTCTTATTTTGTCTGGAGCCGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTTACTTGTGCTCATGTCCTACAAGGATATGgtatac--tctttttaaat--atgaaaatcagacttacaccatactatcattt-tttaaaaatcatgtcattaaacaaattgtaaatactcccattttagttatg------------------------------------------------------------------------------------------

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA05G36910.1 (Glycine max), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
|| || |||||  ||||||| |||||||| ||||| || ||||  |||||||||| ||  ||||| |||||||||||||||||| | |||||||||||||||||||  |   |  || ||  ||  | |   ||  | | |   |   |  || |   |      ||  ||   |||  |  |      | |  ||| |                                                                                                
GGTAATGTACGCATTATTTTGTCTGGAGCAGCACCTCTATCTAGACATGTGGAAGGTTTCCTACGGGTGGTGACTTGTGCTCATATCCTACAAGGATATGgtatgctcttgttaaaatttgatgaattctgttcacaccatacattctttgttttaaatcttttttttgaaaaaaaaaatattcatttacatgaagagaa-----------------------------------------------------------------------------------------------

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA01G43470.3 (Glycine max), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
|| |  ||||| |||||||| |||||||| |||||  | ||| | |||||||||| |||  |||| |||||||||||||||||||| ||||| |||||||||||||  ||  || ||||   ||   |     ||||  |  |   |   ||| | | |||| |||   | |  | |  | ||    ||         |  |||                                                                                           
GGTAGAGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgc--tcttttaaaat--atgaaaataaaacttacaccatgctatcatttttatttgaatcatattattaaacaaattgtaaatactcccattttagttat-------------------------------------------------------------------------------------------

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G02620.1 (Glycine max), 5'ss of exon 14
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCT--CATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
             | ||||| |||||||| ||||| || ||||  || ||||||| ||  |||||||||||||||||||||  ||| | || ||| ||||||||| ||  |   || ||||| |  || | |    | |  | |  | ||| |   | | |      |||   |||||  ||  ||   |  |   ||||| | |     ||||  |||                                                                              
------------ATAATTTTGTCTGGAGCAGCACCTCTATCTAGACACGTGGAAGGTTTCCTACGAGTGGTGACTTGTGCTCTCATATCCTTCAATGATATGGTACGCTCTT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816864|gb|FQ399732.1|FQ399732
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
EST: gi|351053855|gb|FQ441621.1|FQ441621
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
EST: gi|351028751|gb|FQ433181.1|FQ433181
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAATTTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA